Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MJJDGNPF_34 | 91018 | 91722 | WalR | 1.80e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MJJDGNPF_2 | 91613 | 91419 | CspR | 5.82e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MJJDGNPF_2 | 91613 | 91416 | CspA | 8.93e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MJJDGNPF_1 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_2 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_3 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_5 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_6 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_7 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_8 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_9 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_10 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_11 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_12 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_13 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_14 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_15 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_16 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_17 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_18 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_19 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_20 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_21 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_22 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_23 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_24 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_25 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_26 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_27 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_28 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_29 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_30 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_31 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_33 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_34 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_36 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_37 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_39 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_40 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_41 | 1.0 | 0.0 | 1.0 |
| MJJDGNPF_45 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_53 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_56 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_57 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_58 | 0.0 | 1.0 | 0.0 |
| MJJDGNPF_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MJJDGNPF_23 | 227989 | 256375 | False | Siphoviridae | VOG0753, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198, VOG9671, VOG0044, VOG9459, VOG6005 |
| MJJDGNPF_53 | 30594 | 62402 | False | Siphoviridae | VOG0321, VOG4548, VOG9667, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0159, VOG8310, VOG6541, VOG4673, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| MJJDGNPF_53 | 109347 | 117664 | False | Siphoviridae | VOG1300, VOG1638, VOG3549, VOG0650, VOG1309, VOG0186, VOG4566, VOG4693, VOG3480, VOG3468 |
| MJJDGNPF_53 | 119280 | 142781 | False | Siphoviridae | VOG0198, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4626 |
| MJJDGNPF_56 | 40950 | 55148 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275 |
| MJJDGNPF_56 | 59930 | 96694 | False | Siphoviridae | VOG6495, VOG4829, VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG2591, VOG4693, VOG0198, VOG5709, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)