Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KDKDELFF_69 | 44493 | 43789 | WalR | 2.96e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| KDKDELFF_44 | 57616 | 57422 | CspR | 7.52e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KDKDELFF_44 | 57616 | 57419 | CspA | 1.15e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KDKDELFF_37 | 9490 | 10419 | rep28 | 930 / 930 | 97.10 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KDKDELFF_1 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_2 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_3 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_4 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_5 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_6 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_7 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_8 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_9 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_10 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_11 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_12 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_13 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_14 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_15 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_16 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_17 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_18 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_19 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_20 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_21 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_22 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_23 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_24 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_25 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_26 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_27 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_28 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_29 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_30 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_31 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_32 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_33 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_34 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_35 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_36 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_37 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_38 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_39 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_40 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_41 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_42 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_43 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_44 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_46 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_47 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_49 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_50 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_51 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_52 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_53 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_55 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_56 | 1.0 | 0.0 | 1.0 |
| KDKDELFF_65 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_67 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_68 | 0.0 | 1.0 | 0.0 |
| KDKDELFF_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KDKDELFF_4 | 62876 | 67672 | False | Unknown | VOG3549, VOG0650, VOG1309, VOG0186, VOG4566 |
| KDKDELFF_4 | 68889 | 90732 | False | Siphoviridae | VOG6179, VOG0198, VOG1183, VOG0796, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG8134, VOG0701 |
| KDKDELFF_5 | 5093 | 24063 | False | Siphoviridae | VOG3434, VOG1887, VOG4713, VOG1330, VOG1353, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| KDKDELFF_22 | 193449 | 199116 | False | Siphoviridae | VOG9231, VOG6421, VOG4602, VOG9667, VOG11075, VOG11003, VOG6495, VOG0181, VOG7298 |
| KDKDELFF_28 | 17112 | 25517 | False | Siphoviridae | VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556 |
| KDKDELFF_30 | 5579 | 16431 | False | Siphoviridae | VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044 |
| KDKDELFF_69 | 45504 | 54949 | False | Siphoviridae | VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)