Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HPKECMKP_16 | 71764 | 72468 | WalR | 5.49e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HPKECMKP_25 | 6869 | 7063 | CspR | 3.84e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HPKECMKP_25 | 6869 | 7066 | CspA | 5.88e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HPKECMKP_57 | 266 | 1190 | repUS64 | 930 / 954 | 85.48 | JN601038 |
| HPKECMKP_47 | 2485 | 3420 | rep28 | 937 / 936 | 81.11 | CP005948 |
| HPKECMKP_72 | 36 | 616 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPKECMKP_1 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_2 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_3 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_4 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_5 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_6 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_7 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_8 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_9 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_10 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_11 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_12 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_13 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_14 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_15 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_16 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_17 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_18 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_19 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_20 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_21 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_22 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_23 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_24 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_25 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_26 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_27 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_28 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_29 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_30 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_31 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_32 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_33 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_34 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_35 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_36 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_37 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_38 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_39 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_40 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_41 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_42 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_43 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_44 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_45 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_46 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_47 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_48 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_49 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_50 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_51 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_52 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_53 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_56 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_57 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_59 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_61 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_62 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_63 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_64 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_65 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_66 | 1.0 | 0.0 | 1.0 |
| HPKECMKP_67 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_78 | 0.0 | 1.0 | 0.0 |
| HPKECMKP_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPKECMKP_4 | 12280 | 38492 | False | Siphoviridae | VOG0198, VOG3015, VOG5616, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531, VOG9657, VOG0136 |
Phigaro v2.4.0 (Database: Jan. 2024 release)