Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CAMCNBPH_16 | 44210 | 43506 | WalR | 3.60e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CAMCNBPH_21 | 6875 | 7069 | CspR | 4.10e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CAMCNBPH_21 | 6875 | 7072 | CspA | 6.28e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CAMCNBPH_132 | 625 | 1560 | rep28 | 936 / 936 | 100.00 | CP005948 |
| CAMCNBPH_135 | 1905 | 2807 | rep38 | 903 / 903 | 100.00 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CAMCNBPH_1 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_3 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_5 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_6 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_7 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_9 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_10 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_11 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_12 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_13 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_14 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_16 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_17 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_18 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_19 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_21 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_22 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_23 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_24 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_25 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_26 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_27 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_28 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_30 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_32 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_33 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_34 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_35 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_36 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_38 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_39 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_40 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_41 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_42 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_43 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_44 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_45 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_46 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_48 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_49 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_50 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_51 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_53 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_54 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_56 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_57 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_59 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_60 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_61 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_62 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_64 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_66 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_67 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_69 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_71 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_73 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_74 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_75 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_77 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_78 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_79 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_80 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_81 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_83 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_84 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_85 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_86 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_87 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_88 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_90 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_91 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_92 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_93 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_94 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_95 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_96 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_97 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_98 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_99 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_100 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_101 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_103 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_104 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_107 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_108 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_109 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_111 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_112 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_114 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_115 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_116 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_117 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_118 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_119 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_124 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_125 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_127 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_128 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_129 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_130 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_132 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_133 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_135 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_139 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_140 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_141 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_142 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_143 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_144 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_148 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_149 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_150 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_151 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_152 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_153 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_154 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_155 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_156 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_160 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_161 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_162 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_163 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_164 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_166 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_167 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_169 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_170 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_176 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_177 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_179 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_180 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_181 | 0.0 | 1.0 | 0.0 |
| CAMCNBPH_182 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_183 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_184 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_185 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_186 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_187 | 1.0 | 0.0 | 1.0 |
| CAMCNBPH_190 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CAMCNBPH_40 | 1665 | 23641 | False | Siphoviridae | VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| CAMCNBPH_41 | 5365 | 23113 | False | Siphoviridae | VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| CAMCNBPH_93 | 797 | 24735 | False | Siphoviridae | VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)