Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IBBNAMIC_1 | 0.0 | 1.0 | 0.0 |
| IBBNAMIC_2 | 1.0 | 0.0 | 1.0 |
| IBBNAMIC_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IBBNAMIC_1 | 676786 | 703385 | False | Siphoviridae | VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG10939, VOG8997, VOG0207, VOG4586, VOG4545, VOG4633, VOG4659, VOG4612, VOG9945, VOG4705, VOG0861, VOG5087, VOG0703, VOG5190 |
| IBBNAMIC_1 | 815488 | 824511 | False | Siphoviridae | VOG8491, VOG0918, VOG0275, VOG0682, VOG6330, VOG3304, VOG0862, VOG11077, VOG1300 |
| IBBNAMIC_1 | 839952 | 864543 | False | Siphoviridae | VOG9150, VOG0327, VOG0198, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1353, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163, VOG1335, VOG10608, VOG8224, VOG0648 |
| IBBNAMIC_1 | 941973 | 970059 | False | Siphoviridae | VOG3307, VOG6414, VOG2188, VOG7235, VOG0327, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG10939, VOG0207, VOG4586, VOG4760, VOG4633, VOG4659, VOG4612, VOG9945, VOG4705, VOG0861, VOG5087, VOG0703 |
| IBBNAMIC_1 | 1085551 | 1119293 | False | Siphoviridae | VOG9312, VOG6495, VOG4603, VOG4552, VOG1300, VOG0685, VOG0283, VOG5046, VOG11077, VOG4693, VOG0198, VOG3477, VOG0408, VOG0796, VOG4544, VOG0691, VOG0692, VOG5047, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG5859, VOG5008, VOG4705, VOG0861, VOG8181 |
| IBBNAMIC_3 | 6086 | 8857 | False | Unknown | VOG3304, VOG0862, VOG9667, VOG3998, VOG2228 |
| IBBNAMIC_3 | 15789 | 34924 | False | Siphoviridae | VOG0198, VOG3477, VOG0408, VOG1517, VOG4544, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163 |
Phigaro v2.4.0 (Database: Jan. 2024 release)