Probiotic potential risk score


ARGs VFs PGs PPRS
0222.83

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
CJGJPBOO_8016432609STR_RS052200.0CapsuleImmune modulation94.9599.28WP_011227240
CJGJPBOO_8037324799STR_RS052150.0CapsuleImmune modulation94.0198.61WP_011227239

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CJGJPBOO_1134520135224WalR1.73e-114transcriptional regulatory protein84.25100.00EPH95667
CJGJPBOO_451877618970CspR2.87e-30cold shock protein84.6198.48AAO82613
CJGJPBOO_451877618973CspA4.40e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
CJGJPBOO_313701rep28690 / 93680.43CP005948

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
CJGJPBOO_10.01.00.0
CJGJPBOO_20.01.00.0
CJGJPBOO_130.01.00.0
CJGJPBOO_240.01.00.0
CJGJPBOO_350.01.00.0
CJGJPBOO_420.01.00.0
CJGJPBOO_430.01.00.0
CJGJPBOO_440.01.00.0
CJGJPBOO_450.01.00.0
CJGJPBOO_460.01.00.0
CJGJPBOO_470.01.00.0
CJGJPBOO_480.01.00.0
CJGJPBOO_490.01.00.0
CJGJPBOO_500.01.00.0
CJGJPBOO_510.01.00.0
CJGJPBOO_520.01.00.0
CJGJPBOO_530.01.00.0
CJGJPBOO_540.01.00.0
CJGJPBOO_550.01.00.0
CJGJPBOO_560.01.00.0
CJGJPBOO_570.01.00.0
CJGJPBOO_580.01.00.0
CJGJPBOO_590.01.00.0
CJGJPBOO_600.01.00.0
CJGJPBOO_610.01.00.0
CJGJPBOO_620.01.00.0
CJGJPBOO_630.01.00.0
CJGJPBOO_640.01.00.0
CJGJPBOO_650.01.00.0
CJGJPBOO_661.00.01.0
CJGJPBOO_670.01.00.0
CJGJPBOO_680.01.00.0
CJGJPBOO_690.01.00.0
CJGJPBOO_700.01.00.0
CJGJPBOO_710.01.00.0
CJGJPBOO_720.01.00.0
CJGJPBOO_730.01.00.0
CJGJPBOO_741.00.01.0
CJGJPBOO_750.01.00.0
CJGJPBOO_761.00.01.0
CJGJPBOO_770.01.00.0
CJGJPBOO_781.00.01.0
CJGJPBOO_791.00.01.0
CJGJPBOO_801.00.01.0
CJGJPBOO_810.01.00.0
CJGJPBOO_821.00.01.0
CJGJPBOO_830.01.00.0
CJGJPBOO_841.00.01.0
CJGJPBOO_851.00.01.0
CJGJPBOO_860.01.00.0
CJGJPBOO_871.00.01.0
CJGJPBOO_881.00.01.0
CJGJPBOO_891.00.01.0
CJGJPBOO_901.00.01.0
CJGJPBOO_911.00.01.0
CJGJPBOO_920.01.00.0
CJGJPBOO_930.01.00.0
CJGJPBOO_940.01.00.0
CJGJPBOO_951.00.01.0
CJGJPBOO_960.01.00.0
CJGJPBOO_971.00.01.0
CJGJPBOO_980.01.00.0
CJGJPBOO_991.00.01.0
CJGJPBOO_1001.00.01.0
CJGJPBOO_1011.00.01.0
CJGJPBOO_1020.01.00.0
CJGJPBOO_1030.01.00.0
CJGJPBOO_1040.01.00.0
CJGJPBOO_1051.00.01.0
CJGJPBOO_1071.00.01.0
CJGJPBOO_1081.00.01.0
CJGJPBOO_1091.00.01.0
CJGJPBOO_1100.01.00.0
CJGJPBOO_1110.01.00.0
CJGJPBOO_1120.01.00.0
CJGJPBOO_1131.00.01.0
CJGJPBOO_1140.01.00.0
CJGJPBOO_1151.00.01.0
CJGJPBOO_1160.01.00.0
CJGJPBOO_1170.01.00.0
CJGJPBOO_1181.00.01.0
CJGJPBOO_1191.00.01.0
CJGJPBOO_1201.00.01.0
CJGJPBOO_1211.00.01.0
CJGJPBOO_1221.00.01.0
CJGJPBOO_1231.00.01.0
CJGJPBOO_1241.00.01.0
CJGJPBOO_1250.01.00.0
CJGJPBOO_1261.00.01.0
CJGJPBOO_1280.01.00.0
CJGJPBOO_1290.01.00.0
CJGJPBOO_1301.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
CJGJPBOO_47530324695FalseSiphoviridaeVOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0939, VOG4841, VOG0198, VOG3643, VOG0044
CJGJPBOO_53531826240FalseSiphoviridaeVOG11016, VOG0181, VOG9655, VOG6495, VOG11003, VOG4829, VOG6495, VOG4602, VOG7508, VOG4821, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4841, VOG0205, VOG4609, VOG4632
CJGJPBOO_55841129433FalseSiphoviridaeVOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914
CJGJPBOO_582475428669FalseUnknownVOG6139, VOG8709, VOG3547, VOG3549, VOG0650

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements