Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HNLDGBHB_53 | 112506 | 113210 | WalR | 1.61e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HNLDGBHB_42 | 85840 | 85646 | CspR | 1.87e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HNLDGBHB_42 | 85840 | 85643 | CspA | 2.87e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HNLDGBHB_79 | 1 | 936 | rep28 | 937 / 936 | 96.58 | CP005948 |
| HNLDGBHB_49 | 16022 | 17122 | repUS73 | 1101 / 1101 | 94.82 | CP002654 |
| HNLDGBHB_47 | 20432 | 21060 | rep38 | 630 / 903 | 88.41 | CP005943 |
| HNLDGBHB_92 | 186 | 684 | repUS54 | 500 / 690 | 84.80 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HNLDGBHB_1 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_2 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_13 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_24 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_35 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_36 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_37 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_38 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_39 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_40 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_41 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_42 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_43 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_44 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_45 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_46 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_47 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_48 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_49 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_50 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_51 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_52 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_53 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_54 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_55 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_56 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_57 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_58 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_59 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_60 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_61 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_62 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_63 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_64 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_65 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_66 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_67 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_68 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_69 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_70 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_71 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_72 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_73 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_74 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_75 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_76 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_77 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_78 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_79 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_80 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_81 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_82 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_84 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_85 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_86 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_87 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_88 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_89 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_90 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_91 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_92 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_94 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_95 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_96 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_97 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_98 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_99 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_100 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_101 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_102 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_103 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_104 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_105 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_106 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_107 | 1.0 | 0.0 | 1.0 |
| HNLDGBHB_108 | 0.0 | 1.0 | 0.0 |
| HNLDGBHB_119 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HNLDGBHB_1 | 495256 | 525179 | False | Siphoviridae | VOG1521, VOG0054, VOG0753, VOG4615, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG7481, VOG0198, VOG4010, VOG0044, VOG6970 |
| HNLDGBHB_64 | 184307 | 195358 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204 |
| HNLDGBHB_75 | 147891 | 180759 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG9997, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG9667, VOG0198, VOG4693 |
Phigaro v2.4.0 (Database: Jan. 2024 release)