Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PCILNOCN_67 | 28495 | 29199 | WalR | 1.12e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| PCILNOCN_12 | 286460 | 286266 | CspR | 2.02e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PCILNOCN_12 | 286460 | 286263 | CspA | 3.09e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PCILNOCN_28 | 3557 | 4486 | rep28 | 930 / 930 | 99.25 | CP003162 |
| PCILNOCN_18 | 6338 | 7239 | rep38 | 903 / 903 | 96.12 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCILNOCN_1 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_2 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_3 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_4 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_5 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_6 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_7 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_8 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_9 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_10 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_11 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_12 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_13 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_14 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_15 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_16 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_17 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_18 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_19 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_20 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_21 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_22 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_23 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_24 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_25 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_26 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_27 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_28 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_29 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_30 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_31 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_33 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_34 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_35 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_36 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_37 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_38 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_39 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_40 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_41 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_43 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_44 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_45 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_46 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_47 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_48 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_49 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_50 | 1.0 | 0.0 | 1.0 |
| PCILNOCN_56 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_67 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_78 | 0.0 | 1.0 | 0.0 |
| PCILNOCN_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCILNOCN_12 | 107459 | 130980 | False | Siphoviridae | VOG0753, VOG8294, VOG8539, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG5821, VOG4544, VOG0796, VOG0686, VOG0198 |
| PCILNOCN_12 | 135181 | 139392 | False | Siphoviridae | VOG6545, VOG0322, VOG0535, VOG0650, VOG3711 |
| PCILNOCN_78 | 148755 | 156282 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)