Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BECEMMKC_59 | 59170 | 59874 | WalR | 9.53e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BECEMMKC_70 | 52833 | 53027 | CspR | 7.22e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BECEMMKC_70 | 52833 | 53030 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BECEMMKC_55 | 6737 | 7672 | rep28 | 936 / 936 | 100.00 | CP005948 |
| BECEMMKC_49 | 6243 | 7145 | rep38 | 903 / 903 | 100.00 | CP005943 |
| BECEMMKC_80 | 837 | 1793 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BECEMMKC_1 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_2 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_13 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_18 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_19 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_20 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_21 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_22 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_23 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_24 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_25 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_26 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_27 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_28 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_29 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_30 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_31 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_32 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_33 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_34 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_35 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_36 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_37 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_38 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_39 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_40 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_41 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_42 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_43 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_44 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_45 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_46 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_47 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_48 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_49 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_50 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_51 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_52 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_53 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_54 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_55 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_56 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_57 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_58 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_59 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_60 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_61 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_63 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_64 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_65 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_66 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_67 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_68 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_69 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_70 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_71 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_72 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_73 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_74 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_75 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_76 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_77 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_78 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_79 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_80 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_81 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_82 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_83 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_84 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_85 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_86 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_87 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_88 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_89 | 1.0 | 0.0 | 1.0 |
| BECEMMKC_92 | 0.0 | 1.0 | 0.0 |
| BECEMMKC_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BECEMMKC_2 | 22701 | 48506 | False | Siphoviridae | VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| BECEMMKC_2 | 55523 | 74048 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| BECEMMKC_37 | 66523 | 96928 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
Phigaro v2.4.0 (Database: Jan. 2024 release)