Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAMFEDIP_6 | 3 | 533 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | PARTIAL_CONTIG_ENDX | 100.00 | 67.56 | WP_001206315.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PAMFEDIP_71 | 59213 | 59917 | WalR | 9.54e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PAMFEDIP_82 | 46465 | 46659 | CspR | 6.94e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PAMFEDIP_82 | 46465 | 46662 | CspA | 1.06e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PAMFEDIP_98 | 975 | 1910 | rep28 | 936 / 936 | 100.00 | CP005948 |
| PAMFEDIP_100 | 5088 | 5990 | rep38 | 903 / 903 | 100.00 | CP005943 |
| PAMFEDIP_130 | 17 | 973 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAMFEDIP_1 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_2 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_13 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_23 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_33 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_44 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_53 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_56 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_57 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_58 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_59 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_60 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_61 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_62 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_63 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_64 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_65 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_66 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_67 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_68 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_69 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_70 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_71 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_72 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_73 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_74 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_75 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_76 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_77 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_78 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_79 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_80 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_81 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_82 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_83 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_84 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_85 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_86 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_87 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_88 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_89 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_90 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_91 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_92 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_93 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_94 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_95 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_96 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_97 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_98 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_99 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_100 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_101 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_102 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_103 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_104 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_105 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_106 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_107 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_108 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_109 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_110 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_111 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_112 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_113 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_114 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_115 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_116 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_117 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_118 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_119 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_120 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_122 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_123 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_125 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_126 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_127 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_128 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_129 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_130 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_131 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_132 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_133 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_134 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_135 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_137 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_138 | 0.0 | 1.0 | 0.0 |
| PAMFEDIP_139 | 1.0 | 0.0 | 1.0 |
| PAMFEDIP_140 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAMFEDIP_2 | 66639 | 96707 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599 |
| PAMFEDIP_75 | 1763 | 24513 | False | Siphoviridae | VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227 |
| PAMFEDIP_79 | 10390 | 20854 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)