Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GHLDNPNA_785913259836WalR9.52e-115transcriptional regulatory protein84.25100.00EPH95667
GHLDNPNA_895294453138CspR7.23e-30cold shock protein84.6198.48AAO82613
GHLDNPNA_895294453141CspA1.11e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
GHLDNPNA_929751910rep28936 / 936100.00CP005948
GHLDNPNA_8719662868rep38903 / 903100.00CP005943
GHLDNPNA_1191561112repUS64958 / 95492.17JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GHLDNPNA_10.01.00.0
GHLDNPNA_20.01.00.0
GHLDNPNA_130.01.00.0
GHLDNPNA_240.01.00.0
GHLDNPNA_350.01.00.0
GHLDNPNA_460.01.00.0
GHLDNPNA_510.01.00.0
GHLDNPNA_520.01.00.0
GHLDNPNA_530.01.00.0
GHLDNPNA_540.01.00.0
GHLDNPNA_550.01.00.0
GHLDNPNA_560.01.00.0
GHLDNPNA_570.01.00.0
GHLDNPNA_580.01.00.0
GHLDNPNA_590.01.00.0
GHLDNPNA_600.01.00.0
GHLDNPNA_610.01.00.0
GHLDNPNA_620.01.00.0
GHLDNPNA_630.01.00.0
GHLDNPNA_640.01.00.0
GHLDNPNA_650.01.00.0
GHLDNPNA_660.01.00.0
GHLDNPNA_670.01.00.0
GHLDNPNA_680.01.00.0
GHLDNPNA_690.01.00.0
GHLDNPNA_700.01.00.0
GHLDNPNA_710.01.00.0
GHLDNPNA_720.01.00.0
GHLDNPNA_730.01.00.0
GHLDNPNA_740.01.00.0
GHLDNPNA_750.01.00.0
GHLDNPNA_760.01.00.0
GHLDNPNA_770.01.00.0
GHLDNPNA_780.01.00.0
GHLDNPNA_791.00.01.0
GHLDNPNA_801.00.01.0
GHLDNPNA_810.01.00.0
GHLDNPNA_820.01.00.0
GHLDNPNA_830.01.00.0
GHLDNPNA_840.01.00.0
GHLDNPNA_850.01.00.0
GHLDNPNA_860.01.00.0
GHLDNPNA_871.00.01.0
GHLDNPNA_880.01.00.0
GHLDNPNA_890.01.00.0
GHLDNPNA_900.01.00.0
GHLDNPNA_910.01.00.0
GHLDNPNA_921.00.01.0
GHLDNPNA_930.01.00.0
GHLDNPNA_940.01.00.0
GHLDNPNA_951.00.01.0
GHLDNPNA_961.00.01.0
GHLDNPNA_970.01.00.0
GHLDNPNA_980.01.00.0
GHLDNPNA_990.01.00.0
GHLDNPNA_1000.01.00.0
GHLDNPNA_1011.00.01.0
GHLDNPNA_1020.01.00.0
GHLDNPNA_1041.00.01.0
GHLDNPNA_1051.00.01.0
GHLDNPNA_1061.00.01.0
GHLDNPNA_1071.00.01.0
GHLDNPNA_1081.00.01.0
GHLDNPNA_1091.00.01.0
GHLDNPNA_1101.00.01.0
GHLDNPNA_1110.01.00.0
GHLDNPNA_1121.00.01.0
GHLDNPNA_1131.00.01.0
GHLDNPNA_1141.00.01.0
GHLDNPNA_1151.00.01.0
GHLDNPNA_1160.01.00.0
GHLDNPNA_1171.00.01.0
GHLDNPNA_1181.00.01.0
GHLDNPNA_1191.00.01.0
GHLDNPNA_1201.00.01.0
GHLDNPNA_1211.00.01.0
GHLDNPNA_1220.01.00.0
GHLDNPNA_1230.01.00.0
GHLDNPNA_1241.00.01.0
GHLDNPNA_1251.00.01.0
GHLDNPNA_1261.00.01.0
GHLDNPNA_1271.00.01.0
GHLDNPNA_1281.00.01.0
GHLDNPNA_1291.00.01.0
GHLDNPNA_1301.00.01.0
GHLDNPNA_1311.00.01.0
GHLDNPNA_1330.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
GHLDNPNA_111243931243FalseSiphoviridaeVOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957
GHLDNPNA_1332244948254FalseSiphoviridaeVOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616
GHLDNPNA_1335535173949FalseSiphoviridaeVOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements