Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NELFGFFI_129 | 367 | 1035 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | PARTIALX | 100.00 | 85.11 | WP_001206315.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NELFGFFI_79 | 59132 | 59836 | WalR | 9.54e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NELFGFFI_90 | 52928 | 53122 | CspR | 7.23e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NELFGFFI_90 | 52928 | 53125 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NELFGFFI_95 | 6746 | 7681 | rep28 | 936 / 936 | 100.00 | CP005948 |
| NELFGFFI_96 | 4863 | 5765 | rep38 | 903 / 903 | 100.00 | CP005943 |
| NELFGFFI_118 | 803 | 1759 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NELFGFFI_1 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_2 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_13 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_23 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_34 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_45 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_52 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_53 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_54 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_55 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_56 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_57 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_58 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_59 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_60 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_61 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_62 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_63 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_64 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_65 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_66 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_67 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_68 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_69 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_70 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_71 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_72 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_73 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_74 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_75 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_76 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_77 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_78 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_79 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_80 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_81 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_82 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_83 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_84 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_85 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_86 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_87 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_88 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_89 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_90 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_91 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_92 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_93 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_94 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_95 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_96 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_97 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_98 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_99 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_100 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_101 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_103 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_104 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_105 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_106 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_107 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_108 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_109 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_110 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_111 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_112 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_113 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_114 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_115 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_116 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_117 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_118 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_119 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_120 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_121 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_122 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_123 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_124 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_125 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_126 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_127 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_128 | 0.0 | 1.0 | 0.0 |
| NELFGFFI_130 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_131 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_132 | 1.0 | 0.0 | 1.0 |
| NELFGFFI_133 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NELFGFFI_45 | 34849 | 62898 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605 |
| NELFGFFI_61 | 8217 | 26814 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| NELFGFFI_73 | 1739 | 24489 | False | Siphoviridae | VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227 |
Phigaro v2.4.0 (Database: Jan. 2024 release)