Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
DJMMIEAF_775913259836WalR9.54e-115transcriptional regulatory protein84.25100.00EPH95667
DJMMIEAF_885296353157CspR7.23e-30cold shock protein84.6198.48AAO82613
DJMMIEAF_885296353160CspA1.11e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
DJMMIEAF_10111031880rep28778 / 936100.00CP005948
DJMMIEAF_10419662868rep38903 / 903100.00CP005943
DJMMIEAF_1341391095repUS64958 / 95492.17JN601038
DJMMIEAF_43117239ColRNAI123 / 13087.80DQ298019

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
DJMMIEAF_10.01.00.0
DJMMIEAF_20.01.00.0
DJMMIEAF_130.01.00.0
DJMMIEAF_240.01.00.0
DJMMIEAF_340.01.00.0
DJMMIEAF_450.01.00.0
DJMMIEAF_540.01.00.0
DJMMIEAF_620.01.00.0
DJMMIEAF_630.01.00.0
DJMMIEAF_640.01.00.0
DJMMIEAF_650.01.00.0
DJMMIEAF_660.01.00.0
DJMMIEAF_670.01.00.0
DJMMIEAF_680.01.00.0
DJMMIEAF_690.01.00.0
DJMMIEAF_700.01.00.0
DJMMIEAF_710.01.00.0
DJMMIEAF_720.01.00.0
DJMMIEAF_730.01.00.0
DJMMIEAF_740.01.00.0
DJMMIEAF_750.01.00.0
DJMMIEAF_760.01.00.0
DJMMIEAF_770.01.00.0
DJMMIEAF_780.01.00.0
DJMMIEAF_790.01.00.0
DJMMIEAF_800.01.00.0
DJMMIEAF_810.01.00.0
DJMMIEAF_820.01.00.0
DJMMIEAF_830.01.00.0
DJMMIEAF_840.01.00.0
DJMMIEAF_850.01.00.0
DJMMIEAF_860.01.00.0
DJMMIEAF_870.01.00.0
DJMMIEAF_880.01.00.0
DJMMIEAF_890.01.00.0
DJMMIEAF_901.00.01.0
DJMMIEAF_910.01.00.0
DJMMIEAF_920.01.00.0
DJMMIEAF_930.01.00.0
DJMMIEAF_940.01.00.0
DJMMIEAF_950.01.00.0
DJMMIEAF_960.01.00.0
DJMMIEAF_971.00.01.0
DJMMIEAF_980.01.00.0
DJMMIEAF_990.01.00.0
DJMMIEAF_1000.01.00.0
DJMMIEAF_1011.00.01.0
DJMMIEAF_1021.00.01.0
DJMMIEAF_1030.01.00.0
DJMMIEAF_1041.00.01.0
DJMMIEAF_1051.00.01.0
DJMMIEAF_1061.00.01.0
DJMMIEAF_1080.01.00.0
DJMMIEAF_1091.00.01.0
DJMMIEAF_1100.01.00.0
DJMMIEAF_1111.00.01.0
DJMMIEAF_1121.00.01.0
DJMMIEAF_1131.00.01.0
DJMMIEAF_1141.00.01.0
DJMMIEAF_1151.00.01.0
DJMMIEAF_1161.00.01.0
DJMMIEAF_1171.00.01.0
DJMMIEAF_1181.00.01.0
DJMMIEAF_1191.00.01.0
DJMMIEAF_1201.00.01.0
DJMMIEAF_1210.01.00.0
DJMMIEAF_1221.00.01.0
DJMMIEAF_1230.01.00.0
DJMMIEAF_1241.00.01.0
DJMMIEAF_1251.00.01.0
DJMMIEAF_1261.00.01.0
DJMMIEAF_1270.01.00.0
DJMMIEAF_1281.00.01.0
DJMMIEAF_1291.00.01.0
DJMMIEAF_1301.00.01.0
DJMMIEAF_1311.00.01.0
DJMMIEAF_1320.01.00.0
DJMMIEAF_1331.00.01.0
DJMMIEAF_1341.00.01.0
DJMMIEAF_1351.00.01.0
DJMMIEAF_1361.00.01.0
DJMMIEAF_1371.00.01.0
DJMMIEAF_1381.00.01.0
DJMMIEAF_1391.00.01.0
DJMMIEAF_1401.00.01.0
DJMMIEAF_1430.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
DJMMIEAF_22244948254FalseSiphoviridaeVOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616
DJMMIEAF_25527173881FalseSiphoviridaeVOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632
DJMMIEAF_143325333487FalseSiphoviridaeVOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements