Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBJPAOGG_65 | 11108 | 10404 | WalR | 3.68e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| LBJPAOGG_51 | 84166 | 84360 | CspR | 7.09e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LBJPAOGG_51 | 84166 | 84363 | CspA | 1.09e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBJPAOGG_2 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_3 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_4 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_5 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_7 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_8 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_11 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_12 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_13 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_14 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_22 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_32 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_33 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_34 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_35 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_36 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_37 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_38 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_39 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_40 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_41 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_42 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_43 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_44 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_45 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_46 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_47 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_48 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_49 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_50 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_51 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_52 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_53 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_54 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_55 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_56 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_57 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_58 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_59 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_60 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_61 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_62 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_63 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_64 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_65 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_66 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_67 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_68 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_69 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_70 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_71 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_72 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_73 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_74 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_75 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_76 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_77 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_78 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_79 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_80 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_81 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_82 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_83 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_84 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_85 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_86 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_87 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_88 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_89 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_90 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_91 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_92 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_93 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_94 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_95 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_96 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_97 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_98 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_99 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_100 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_101 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_102 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_103 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_104 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_105 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_106 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_107 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_108 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_109 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_110 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_111 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_112 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_113 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_114 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_115 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_117 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_118 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_119 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_120 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_121 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_122 | 0.0 | 1.0 | 0.0 |
| LBJPAOGG_123 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_124 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_125 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_126 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_127 | 1.0 | 0.0 | 1.0 |
| LBJPAOGG_128 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBJPAOGG_50 | 3431 | 28060 | False | Siphoviridae | VOG3462, VOG0801, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG4571, VOG0198, VOG0044, VOG0586, VOG0189, VOG4566, VOG0514, VOG0226, VOG0283 |
| LBJPAOGG_73 | 75849 | 114633 | False | Siphoviridae | VOG0348, VOG9326, VOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG8925, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0586, VOG0044, VOG4673, VOG5495, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG1521, VOG1191, VOG3443 |
| LBJPAOGG_117 | 98993 | 106411 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)