Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPAOMEJG_53 | 138391 | 139095 | WalR | 1.08e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NPAOMEJG_52 | 9059 | 9256 | CspR | 2.45e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NPAOMEJG_14 | 2375 | 3436 | repUS74 | 1062 / 1062 | 96.61 | CP000424 |
| NPAOMEJG_21 | 8882 | 9939 | repUS75 | 1060 / 1059 | 92.55 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPAOMEJG_1 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_2 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_3 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_4 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_5 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_6 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_7 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_8 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_9 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_10 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_11 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_12 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_13 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_14 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_15 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_16 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_17 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_18 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_19 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_20 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_21 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_22 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_23 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_24 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_25 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_26 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_27 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_28 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_29 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_30 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_31 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_32 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_33 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_35 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_36 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_37 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_38 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_39 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_40 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_41 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_42 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_43 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_44 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_45 | 1.0 | 0.0 | 1.0 |
| NPAOMEJG_51 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_52 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_53 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_54 | 0.0 | 1.0 | 0.0 |
| NPAOMEJG_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPAOMEJG_22 | 1834 | 31715 | False | Siphoviridae | VOG4813, VOG9759, VOG2820, VOG3643, VOG7409, VOG3643, VOG0044, VOG1563, VOG0198, VOG2545, VOG0376, VOG4570, VOG4549, VOG9033, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG9955, VOG6540, VOG0703 |
| NPAOMEJG_33 | 183231 | 210587 | False | Siphoviridae | VOG1292, VOG0275, VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0221 |
| NPAOMEJG_52 | 29594 | 64007 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536, VOG9741, VOG0152, VOG3643, VOG0198, VOG4570, VOG3699, VOG4544, VOG0720, VOG4564, VOG5616, VOG1300, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918, VOG4605 |
Phigaro v2.4.0 (Database: Jan. 2024 release)