Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KNNLGKIM_62 | 2209 | 2913 | WalR | 2.01e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KNNLGKIM_49 | 45660 | 45854 | CspR | 7.66e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KNNLGKIM_49 | 45660 | 45857 | CspA | 1.17e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KNNLGKIM_2 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_3 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_4 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_5 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_6 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_7 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_8 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_9 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_10 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_11 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_12 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_13 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_14 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_16 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_18 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_20 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_22 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_33 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_42 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_43 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_44 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_45 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_46 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_47 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_48 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_49 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_50 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_51 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_52 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_53 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_54 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_55 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_56 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_57 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_58 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_59 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_60 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_61 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_62 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_63 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_64 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_65 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_66 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_67 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_68 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_69 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_70 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_71 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_72 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_73 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_74 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_75 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_76 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_77 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_78 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_79 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_80 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_81 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_82 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_83 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_84 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_85 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_86 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_87 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_88 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_89 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_90 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_91 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_92 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_93 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_94 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_95 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_96 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_97 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_98 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_99 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_100 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_101 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_102 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_103 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_104 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_105 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_106 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_107 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_108 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_109 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_110 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_111 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_112 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_113 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_114 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_115 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_116 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_117 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_118 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_119 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_120 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_121 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_122 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_123 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_124 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_125 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_126 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_127 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_128 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_129 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_130 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_132 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_133 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_134 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_135 | 1.0 | 0.0 | 1.0 |
| KNNLGKIM_136 | 0.0 | 1.0 | 0.0 |
| KNNLGKIM_137 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KNNLGKIM_42 | 49157 | 69077 | False | Siphoviridae | VOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3643, VOG0052, VOG6972, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562 |
| KNNLGKIM_49 | 119093 | 140293 | False | Siphoviridae | VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG3772, VOG0695, VOG0696, VOG0697, VOG0698, VOG5165, VOG0701, VOG6163, VOG0801, VOG4619 |
| KNNLGKIM_56 | 28156 | 30857 | False | Unknown | VOG8294, VOG0602, VOG9888 |
| KNNLGKIM_58 | 3191 | 34854 | False | Siphoviridae | VOG0254, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0468, VOG4841, VOG0198, VOG9671, VOG3643, VOG0044, VOG1298, VOG6005, VOG0189, VOG4566, VOG0514, VOG0322, VOG0535, VOG7859 |
| KNNLGKIM_84 | 1930 | 23352 | False | Siphoviridae | VOG8438, VOG4626, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG10527, VOG0692, VOG0691, VOG5821 |
| KNNLGKIM_137 | 46352 | 57924 | False | Siphoviridae | VOG7515, VOG0198, VOG0204, VOG4553, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
Phigaro v2.4.0 (Database: Jan. 2024 release)