Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FMMAEFGK_10 | 22946 | 22245 | WalR | 5.16e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FMMAEFGK_1 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_2 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_3 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_4 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_5 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_6 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_7 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_8 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_9 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_10 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_11 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_12 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_13 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_14 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_15 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_16 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_17 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_18 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_19 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_20 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_21 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_22 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_23 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_24 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_25 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_26 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_27 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_28 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_30 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_31 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_32 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_33 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_34 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_35 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_36 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_37 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_38 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_39 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_41 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_42 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_43 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_44 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_45 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_46 | 1.0 | 0.0 | 1.0 |
| FMMAEFGK_47 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_55 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_61 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_62 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_63 | 0.0 | 1.0 | 0.0 |
| FMMAEFGK_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FMMAEFGK_6 | 4260 | 15478 | False | Siphoviridae | VOG3477, VOG0198, VOG0204, VOG4553, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| FMMAEFGK_7 | 4583 | 33975 | False | Myoviridae | VOG0861, VOG7896, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG8263, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG4214, VOG7145, VOG0198 |
| FMMAEFGK_7 | 35086 | 38128 | False | Unknown | VOG4693, VOG7236, VOG4855 |
| FMMAEFGK_8 | 11960 | 41696 | False | Siphoviridae | VOG0283, VOG0226, VOG0514, VOG4566, VOG4673, VOG0044, VOG3643, VOG0198, VOG4737, VOG4544, VOG0720, VOG7038, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG9955, VOG5318, VOG4705, VOG0703 |
| FMMAEFGK_9 | 3600 | 32414 | False | Myoviridae | VOG0703, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG5904, VOG6684, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0045, VOG0198, VOG0149, VOG5733, VOG0044, VOG0052, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)