Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PAOBLJNI_14 | 13051 | 13752 | WalR | 3.45e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAOBLJNI_1 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_2 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_3 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_4 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_5 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_6 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_7 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_8 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_9 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_10 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_11 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_12 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_13 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_14 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_15 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_16 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_17 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_18 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_19 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_20 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_21 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_22 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_23 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_24 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_25 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_26 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_27 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_28 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_29 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_30 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_31 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_32 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_33 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_34 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_35 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_37 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_38 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_40 | 1.0 | 0.0 | 1.0 |
| PAOBLJNI_41 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_42 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_43 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_44 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_45 | 0.0 | 1.0 | 0.0 |
| PAOBLJNI_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAOBLJNI_5 | 1506 | 30699 | False | Siphoviridae | VOG0703, VOG4705, VOG5318, VOG9955, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG4564, VOG7038, VOG0720, VOG4544, VOG4737, VOG0198, VOG3643, VOG0195, VOG0044, VOG0822 |
| PAOBLJNI_22 | 130277 | 141760 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| PAOBLJNI_33 | 165534 | 195960 | False | Myoviridae | VOG0044, VOG3643, VOG5393, VOG0149, VOG0198, VOG3558, VOG0796, VOG10227, VOG1912, VOG4564, VOG4918, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG0870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)