Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBKHOPNF_1 | 1892513 | 1894438 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PBKHOPNF_1 | 815888 | 817813 | tet(Q) | ARO:3000191 | tet(Q) | 97.97 | 97.56 | Z21523.1 |
| PBKHOPNF_3 | 44190 | 45350 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 99.48 | M37699.1 |
| PBKHOPNF_3 | 42600 | 43826 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| PBKHOPNF_3 | 41536 | 42399 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| PBKHOPNF_3 | 38704 | 39528 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| PBKHOPNF_3 | 37701 | 38501 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| PBKHOPNF_1 | 16558 | 17292 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBKHOPNF_3 | 38704 | 39528 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| PBKHOPNF_1 | 1892513 | 1894438 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PBKHOPNF_3 | 44184 | 45350 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| PBKHOPNF_3 | 37701 | 38501 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| PBKHOPNF_1 | 16558 | 17292 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| PBKHOPNF_3 | 42600 | 43826 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBKHOPNF_3 | 41536 | 42396 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| PBKHOPNF_3 | 38707 | 39528 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| PBKHOPNF_3 | 44184 | 45347 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| PBKHOPNF_1 | 16558 | 17289 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| PBKHOPNF_1 | 1892516 | 1894438 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PBKHOPNF_3 | 37701 | 38498 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| PBKHOPNF_1 | 815891 | 817813 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.97 | 100.00 | WP_002560998.1 |
| PBKHOPNF_3 | 42603 | 43826 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBKHOPNF_2 | 1444 | 2142 | repUS2 | 701 / 681 | 95.86 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBKHOPNF_1 | 0.0 | 1.0 | 0.0 |
| PBKHOPNF_2 | 1.0 | 0.0 | 1.0 |
| PBKHOPNF_3 | 1.0 | 0.0 | 1.0 |
| PBKHOPNF_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBKHOPNF_1 | 1796285 | 1807114 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)