Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMAEOHLG_1 | 4000863 | 4001753 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| LMAEOHLG_1 | 2289951 | 2290685 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| LMAEOHLG_1 | 250842 | 252767 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LMAEOHLG_1 | 250842 | 252767 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LMAEOHLG_1 | 2289951 | 2290685 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| LMAEOHLG_3 | 2034 | 2788 | cfxA6 | Unknown Beta-lactam | 87.43 | 75.70 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMAEOHLG_1 | 2289951 | 2290682 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| LMAEOHLG_1 | 250842 | 252764 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LMAEOHLG_1 | 4000863 | 4001750 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| LMAEOHLG_3 | 1893 | 2837 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | BLASTX | 80.32 | 98.44 | WP_117664257.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMAEOHLG_1 | 0.0 | 1.0 | 0.0 |
| LMAEOHLG_2 | 1.0 | 0.0 | 1.0 |
| LMAEOHLG_3 | 1.0 | 0.0 | 1.0 |
| LMAEOHLG_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMAEOHLG_1 | 1418801 | 1436816 | False | Myoviridae | VOG2142, |
| LMAEOHLG_1 | 1784163 | 1807803 | False | Siphoviridae | VOG0322, |
| LMAEOHLG_1 | 2852585 | 2863568 | False | Unknown | VOG3992, |
| LMAEOHLG_1 | 3320189 | 3334902 | False | Unknown | VOG3992, |
| LMAEOHLG_1 | 3882936 | 3893398 | False | Unknown | VOG0090, |
| LMAEOHLG_1 | 4245922 | 4264234 | False | Siphoviridae | VOG10980, |
Phigaro v2.4.0 (Database: Jan. 2024 release)