safety

PPRS ARGs VFs PGs Plasmid Prophage IS elements

ARGs	VFs	PGs	PPRS
8	0	0	8.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
LCAMBKIN_1	3181149	3182012	aadS	ARO:3004683	aadS	100.00	100.00	M72415.1
LCAMBKIN_1	3179837	3180973	tet(X)	ARO:3000205	tet(X)	99.47	97.42	M37699.1
LCAMBKIN_1	3178499	3179638	tet(X1)	ARO:3005166	tet(X1)	99.72	105.57	AJ311171.1
LCAMBKIN_1	3161472	3163397	tet(Q)	ARO:3000191	tet(Q)	97.04	97.56	Z21523.1
LCAMBKIN_1	520739	521944	Mef(En2)	ARO:3004659	Mef(En2)	99.50	100.00	AF251288.1
LCAMBKIN_1	393988	394890	cepA	ARO:3003559	cepA	99.67	100.00	U05883.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LCAMBKIN_1	3161472	3163397	tet(Q)	Doxycycline, Tetracycline, Minocycline	100.00	100.00	X58717
LCAMBKIN_1	3179807	3180973	tet(X)	Doxycycline, Tetracycline, Minocycline, Tigecycline	99.83	100.00	M37699
LCAMBKIN_1	393988	394890	cepA-49	Unknown Beta-lactam	99.78	100.00	U05886
LCAMBKIN_1	3177393	3178193	erm(F)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	99.75	100.00	M62487

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LCAMBKIN_1	3181149	3182009	aadS	aminoglycoside 6-adenylyltransferase AadS	EXACTX	100.00	100.00	WP_003013318.1
LCAMBKIN_1	521969	522478	lnu(AN2)	lincosamide nucleotidyltransferase Lnu(AN2)	EXACTX	100.00	100.00	WP_004308783.1
LCAMBKIN_1	3161475	3163397	tet(Q)	tetracycline resistance ribosomal protection protein Tet(Q)	EXACTX	100.00	100.00	WP_004293868.1
LCAMBKIN_1	3179807	3180970	tet(X2)	tetracycline-inactivating monooxygenase Tet(X2)	EXACTX	100.00	100.00	WP_008651082.1
LCAMBKIN_1	3178499	3179635	tet(X1)	tetracycline-inactivating monooxygenase Tet(X1)	BLASTX	99.74	100.00	WP_204376222.1
LCAMBKIN_1	393991	394890	cepA	CepA family extended-spectrum class A beta-lactamase	BLASTX	99.67	100.00	WP_005795628.1
LCAMBKIN_1	3177396	3178193	erm(F)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)	INTERNAL_STOP	99.62	100.00	WP_063844773.1
LCAMBKIN_1	520739	521941	mef(En2)	macrolide efflux MFS transporter Mef(En2)	BLASTX	99.50	100.00	WP_063853729.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
LCAMBKIN_1	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)