Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OAGAFIAF_78 | 66831 | 66127 | WalR | 1.41e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| OAGAFIAF_1 | 276479 | 276282 | CspR | 1.69e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OAGAFIAF_53 | 2537 | 3571 | rep38 | 1046 / 1104 | 82.70 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OAGAFIAF_1 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_2 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_3 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_4 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_5 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_6 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_7 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_8 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_9 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_10 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_11 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_12 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_13 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_14 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_15 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_16 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_17 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_18 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_19 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_20 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_22 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_23 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_24 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_25 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_26 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_27 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_28 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_29 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_30 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_31 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_32 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_33 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_34 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_35 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_36 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_37 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_38 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_39 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_40 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_41 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_42 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_43 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_44 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_45 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_46 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_47 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_48 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_49 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_50 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_51 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_52 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_53 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_54 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_55 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_56 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_57 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_58 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_59 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_60 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_61 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_62 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_64 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_65 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_66 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_67 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_68 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_69 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_70 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_71 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_72 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_73 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_74 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_75 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_77 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_78 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_79 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_80 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_81 | 1.0 | 0.0 | 1.0 |
| OAGAFIAF_82 | 0.0 | 1.0 | 0.0 |
| OAGAFIAF_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OAGAFIAF_9 | 1858 | 44366 | False | Siphoviridae | VOG6914, VOG7581, VOG6463, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0283, VOG0514, VOG10904, VOG0226, VOG4799, VOG0025, VOG7735, VOG7018, VOG9860, VOG0536, VOG4571, VOG0152, VOG3307, VOG3643, VOG0044, VOG0198, VOG7136, VOG4570, VOG10904, VOG4549, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918, VOG3412 |
Phigaro v2.4.0 (Database: Jan. 2024 release)