Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKMBLIOM_53 | 2355 | 3215 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HKMBLIOM_53 | 2355 | 3215 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKMBLIOM_53 | 2355 | 3212 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HKMBLIOM_84 | 112233 | 111529 | WalR | 3.29e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HKMBLIOM_105 | 154223 | 154420 | CspR | 1.12e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HKMBLIOM_53 | 3630 | 3760 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HKMBLIOM_11 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_22 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_33 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_44 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_46 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_47 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_48 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_49 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_50 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_52 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_53 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_54 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_55 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_56 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_57 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_58 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_59 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_60 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_61 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_63 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_64 | 1.0 | 0.0 | 1.0 |
| HKMBLIOM_74 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_84 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_95 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_105 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_116 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_127 | 0.0 | 1.0 | 0.0 |
| HKMBLIOM_138 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HKMBLIOM_48 | 1175 | 32098 | False | Siphoviridae | VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4570, VOG10481, VOG0143, VOG0198, VOG0044, VOG1298, VOG3643, VOG0152, VOG9759, VOG4693, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG4552 |
| HKMBLIOM_105 | 75996 | 84936 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG1886, VOG5051, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)