Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECKIGLAC_44 | 8493 | 9458 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ECKIGLAC_44 | 8493 | 9458 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| ECKIGLAC_44 | 8493 | 9458 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| ECKIGLAC_44 | 8493 | 9458 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| ECKIGLAC_44 | 8493 | 9458 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| ECKIGLAC_29 | 618 | 1372 | cfxA6 | Unknown Beta-lactam | 87.17 | 75.70 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECKIGLAC_44 | 8493 | 9455 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| ECKIGLAC_29 | 569 | 1513 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | BLASTX | 80.00 | 98.44 | WP_117664257.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ECKIGLAC_77 | 173459 | 171879 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ECKIGLAC_36 | 185 | 864 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ECKIGLAC_1 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_2 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_3 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_4 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_5 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_6 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_7 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_8 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_9 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_10 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_11 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_12 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_13 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_14 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_15 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_16 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_17 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_18 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_19 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_20 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_21 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_22 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_23 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_24 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_25 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_26 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_27 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_28 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_29 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_30 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_31 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_32 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_33 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_34 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_36 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_37 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_38 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_39 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_40 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_41 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_42 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_43 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_44 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_46 | 1.0 | 0.0 | 1.0 |
| ECKIGLAC_47 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_55 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_66 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_77 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_79 | 0.0 | 1.0 | 0.0 |
| ECKIGLAC_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)