Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGIDDJHP_81 | 162 | 1463 | tet(Q) | ARO:3000191 | tet(Q) | 99.75 | 65.91 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGIDDJHP_45 | 5395 | 6261 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| KGIDDJHP_50 | 8404 | 9354 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
| KGIDDJHP_81 | 129 | 1372 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.44 | 63.31 | U73497 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGIDDJHP_45 | 3698 | 4471 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| KGIDDJHP_45 | 5395 | 6258 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| KGIDDJHP_50 | 8403 | 9356 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
| KGIDDJHP_81 | 165 | 1370 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 99.75 | 62.71 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGIDDJHP_14 | 22694 | 21114 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGIDDJHP_11 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_13 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_14 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_15 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_16 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_17 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_18 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_19 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_20 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_21 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_22 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_23 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_24 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_25 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_26 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_27 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_28 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_29 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_30 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_31 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_32 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_33 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_34 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_35 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_36 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_37 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_38 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_39 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_40 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_41 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_42 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_43 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_44 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_45 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_46 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_47 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_48 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_49 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_50 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_51 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_52 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_54 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_55 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_56 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_57 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_58 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_59 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_60 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_62 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_63 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_64 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_65 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_66 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_67 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_68 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_69 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_70 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_71 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_72 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_73 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_74 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_75 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_76 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_77 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_78 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_79 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_80 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_81 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_82 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_83 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_84 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_85 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_86 | 1.0 | 0.0 | 1.0 |
| KGIDDJHP_88 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_99 | 0.0 | 1.0 | 0.0 |
| KGIDDJHP_110 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGIDDJHP_23 | 11162 | 15183 | True | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)