Probiotic potential risk score


ARGs VFs PGs PPRS
5015.10

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
NLDOGDIO_42114293116218tet(Q)ARO:3000191tet(Q)98.7597.56Z21523.1
NLDOGDIO_1237869680621tet(Q)ARO:3000191tet(Q)96.4197.56Z21523.1
NLDOGDIO_4159627167Mef(En2)ARO:3004659Mef(En2)99.50100.00AF251288.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
NLDOGDIO_1237869680621tet(Q)Doxycycline, Tetracycline, Minocycline99.84100.00L33696

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
NLDOGDIO_48111221112126blaMUN-1MUN family extended-spectrum class A beta-lactamase MUN-1ALLELEX100.00100.00WP_206340447.1
NLDOGDIO_4154285937lnu(AN2)lincosamide nucleotidyltransferase Lnu(AN2)EXACTX100.00100.00WP_004308783.1
NLDOGDIO_1237869980621tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX99.53100.00WP_063856407.1
NLDOGDIO_4159657167mef(En2)macrolide efflux MFS transporter Mef(En2)BLASTX99.50100.00WP_063853729.1
NLDOGDIO_42114296116218tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX98.75100.00WP_002560998.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
NLDOGDIO_134156292154712GroEL0.0folding of newly synthesized proteins, preventing misfolding and aggregation80.6496.70BAA04222

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
NLDOGDIO_8521342813repUS2682 / 68198.53BFU30316

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
NLDOGDIO_110.01.00.0
NLDOGDIO_220.01.00.0
NLDOGDIO_330.01.00.0
NLDOGDIO_390.01.00.0
NLDOGDIO_400.01.00.0
NLDOGDIO_410.01.00.0
NLDOGDIO_420.01.00.0
NLDOGDIO_430.01.00.0
NLDOGDIO_440.01.00.0
NLDOGDIO_450.01.00.0
NLDOGDIO_460.01.00.0
NLDOGDIO_470.01.00.0
NLDOGDIO_480.01.00.0
NLDOGDIO_490.01.00.0
NLDOGDIO_500.01.00.0
NLDOGDIO_510.01.00.0
NLDOGDIO_520.01.00.0
NLDOGDIO_530.01.00.0
NLDOGDIO_540.01.00.0
NLDOGDIO_550.01.00.0
NLDOGDIO_561.00.01.0
NLDOGDIO_570.01.00.0
NLDOGDIO_580.01.00.0
NLDOGDIO_590.01.00.0
NLDOGDIO_600.01.00.0
NLDOGDIO_610.01.00.0
NLDOGDIO_620.01.00.0
NLDOGDIO_630.01.00.0
NLDOGDIO_640.01.00.0
NLDOGDIO_650.01.00.0
NLDOGDIO_661.00.01.0
NLDOGDIO_670.01.00.0
NLDOGDIO_680.01.00.0
NLDOGDIO_690.01.00.0
NLDOGDIO_700.01.00.0
NLDOGDIO_710.01.00.0
NLDOGDIO_720.01.00.0
NLDOGDIO_730.01.00.0
NLDOGDIO_740.01.00.0
NLDOGDIO_750.01.00.0
NLDOGDIO_761.00.01.0
NLDOGDIO_781.00.01.0
NLDOGDIO_790.01.00.0
NLDOGDIO_800.01.00.0
NLDOGDIO_811.00.01.0
NLDOGDIO_820.01.00.0
NLDOGDIO_831.00.01.0
NLDOGDIO_841.00.01.0
NLDOGDIO_851.00.01.0
NLDOGDIO_861.00.01.0
NLDOGDIO_871.00.01.0
NLDOGDIO_881.00.01.0
NLDOGDIO_890.01.00.0
NLDOGDIO_900.01.00.0
NLDOGDIO_911.00.01.0
NLDOGDIO_921.00.01.0
NLDOGDIO_931.00.01.0
NLDOGDIO_941.00.01.0
NLDOGDIO_951.00.01.0
NLDOGDIO_961.00.01.0
NLDOGDIO_1010.01.00.0
NLDOGDIO_1120.01.00.0
NLDOGDIO_1230.01.00.0
NLDOGDIO_1340.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
NLDOGDIO_33113185122936TrueUnknownVOG8336,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements