Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FGDIAGFP_32 | 15718 | 16956 | tet(Q) | ARO:3000191 | tet(Q) | 96.37 | 62.86 | Z21523.1 |
| FGDIAGFP_69 | 162 | 1463 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 65.91 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FGDIAGFP_32 | 5395 | 6261 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| FGDIAGFP_39 | 8404 | 9354 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
| FGDIAGFP_32 | 15766 | 16956 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.83 | 61.84 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FGDIAGFP_32 | 3698 | 4471 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| FGDIAGFP_32 | 5395 | 6258 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| FGDIAGFP_39 | 8403 | 9356 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
| FGDIAGFP_69 | 165 | 1370 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 100.00 | 62.71 | WP_002560998.1 |
| FGDIAGFP_32 | 15766 | 16956 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.50 | 61.93 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FGDIAGFP_5 | 22694 | 21114 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FGDIAGFP_3 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_4 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_5 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_6 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_7 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_8 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_9 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_10 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_11 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_12 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_13 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_14 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_15 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_16 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_17 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_18 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_19 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_20 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_21 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_22 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_23 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_24 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_25 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_26 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_27 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_28 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_29 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_30 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_31 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_32 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_33 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_34 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_35 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_36 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_37 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_38 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_39 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_40 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_41 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_42 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_43 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_44 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_45 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_46 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_48 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_49 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_50 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_51 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_52 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_53 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_54 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_55 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_56 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_57 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_58 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_59 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_60 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_62 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_63 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_64 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_65 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_66 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_67 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_68 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_69 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_70 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_71 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_72 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_73 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_74 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_75 | 1.0 | 0.0 | 1.0 |
| FGDIAGFP_79 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_90 | 0.0 | 1.0 | 0.0 |
| FGDIAGFP_101 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FGDIAGFP_68 | 11162 | 15548 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)