Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJGOCIIH_7 | 114408 | 116333 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| KJGOCIIH_84 | 74046 | 75971 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| KJGOCIIH_6 | 4609 | 5814 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KJGOCIIH_84 | 74046 | 75971 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJGOCIIH_13 | 111221 | 112126 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| KJGOCIIH_6 | 4075 | 4584 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| KJGOCIIH_84 | 74049 | 75971 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KJGOCIIH_6 | 4612 | 5814 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| KJGOCIIH_7 | 114411 | 116333 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KJGOCIIH_85 | 156292 | 154712 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KJGOCIIH_52 | 341 | 1020 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KJGOCIIH_1 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_2 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_3 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_4 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_5 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_6 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_7 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_8 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_9 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_10 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_11 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_12 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_13 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_14 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_15 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_16 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_17 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_18 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_19 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_20 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_21 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_22 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_23 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_24 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_25 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_26 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_27 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_28 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_29 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_30 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_31 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_32 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_33 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_34 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_35 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_36 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_37 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_38 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_39 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_40 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_41 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_42 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_43 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_44 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_46 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_47 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_48 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_49 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_50 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_51 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_52 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_53 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_54 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_55 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_56 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_57 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_58 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_59 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_60 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_61 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_62 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_63 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_64 | 1.0 | 0.0 | 1.0 |
| KJGOCIIH_66 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_77 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_84 | 0.0 | 1.0 | 0.0 |
| KJGOCIIH_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KJGOCIIH_4 | 113186 | 122937 | True | Unknown | VOG8336, |
Phigaro v2.4.0 (Database: Jan. 2024 release)