Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJLCGLHH_8 | 70812 | 72737 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJLCGLHH_8 | 70812 | 72737 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJLCGLHH_8 | 70812 | 72734 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GJLCGLHH_1 | 165000 | 163420 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJLCGLHH_1 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_2 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_3 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_4 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_5 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_6 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_7 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_8 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_9 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_10 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_11 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_12 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_13 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_14 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_15 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_16 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_17 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_18 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_19 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_20 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_21 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_22 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_23 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_24 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_25 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_26 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_27 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_28 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_29 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_30 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_32 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_33 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_34 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_35 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_36 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_37 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_38 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_39 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_40 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_41 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_42 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_43 | 1.0 | 0.0 | 1.0 |
| GJLCGLHH_44 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_55 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_66 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_77 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_82 | 0.0 | 1.0 | 0.0 |
| GJLCGLHH_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GJLCGLHH_2 | 140467 | 149722 | False | Unknown | VOG4568, |
| GJLCGLHH_82 | 64876 | 72844 | False | Siphoviridae | VOG4751, |
Phigaro v2.4.0 (Database: Jan. 2024 release)