Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 1 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OPMIPBFK_2 | 12412 | 13827 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 95.27 | 100.00 | WP_011681165 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPMIPBFK_1 | 38606 | 39310 | WalR | 1.75e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OPMIPBFK_11 | 1 | 936 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OPMIPBFK_1 | 0.0 | 1.0 | 0.0 |
| OPMIPBFK_2 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_3 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_4 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_5 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_6 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_7 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_8 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_9 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_10 | 1.0 | 0.0 | 1.0 |
| OPMIPBFK_11 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OPMIPBFK_1 | 571916 | 605093 | False | Siphoviridae | VOG3549, VOG0650, VOG1309, VOG0186, VOG4566, VOG4552, VOG4693, VOG9507, VOG10015, VOG0044, VOG0198, VOG5709, VOG4052, VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4828, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4783 |
| OPMIPBFK_1 | 1807795 | 1838695 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0468, VOG1839, VOG4841, VOG0198, VOG0044, VOG10015, VOG0586, VOG4693, VOG11024, VOG0189, VOG8647, VOG0514, VOG0322 |
| OPMIPBFK_1 | 2136148 | 2145540 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
Phigaro v2.4.0 (Database: Jan. 2024 release)