Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBJIKFJF_175 | 43784 | 42606 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| LBJIKFJF_56 | 27009 | 28514 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| LBJIKFJF_147 | 4533 | 5402 | pdxS | 1.11e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| LBJIKFJF_32 | 5188 | 4412 | CodY | 1.09e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| LBJIKFJF_32 | 5188 | 4412 | codY | 5.26e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| LBJIKFJF_114 | 27783 | 27214 | ClpP | 1.20e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| LBJIKFJF_134 | 516 | 1202 | WalR | 2.27e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| LBJIKFJF_121 | 7423 | 7031 | spxA1 | 7.91e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| LBJIKFJF_121 | 7423 | 7031 | spx | 1.71e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| LBJIKFJF_46 | 33735 | 33493 | SpoVG | 8.00e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| LBJIKFJF_126 | 12243 | 12440 | CspA | 2.92e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| LBJIKFJF_49 | 46823 | 47017 | CspD | 2.98e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LBJIKFJF_49 | 46823 | 47020 | CspB | 2.00e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBJIKFJF_1 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_2 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_3 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_4 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_5 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_6 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_7 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_8 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_9 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_10 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_11 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_12 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_13 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_14 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_15 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_16 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_17 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_18 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_19 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_20 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_21 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_22 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_23 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_24 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_25 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_26 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_27 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_28 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_29 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_32 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_36 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_41 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_43 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_46 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_48 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_49 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_51 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_52 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_54 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_56 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_57 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_58 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_60 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_63 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_74 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_83 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_84 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_91 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_100 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_102 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_103 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_104 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_105 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_106 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_107 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_108 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_109 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_110 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_111 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_112 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_113 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_114 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_115 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_116 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_117 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_118 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_119 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_120 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_121 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_122 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_123 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_124 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_125 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_126 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_127 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_128 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_129 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_130 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_131 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_132 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_133 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_134 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_135 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_136 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_137 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_138 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_139 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_140 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_141 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_142 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_143 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_144 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_145 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_146 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_147 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_148 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_149 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_150 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_151 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_152 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_153 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_154 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_155 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_156 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_157 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_158 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_159 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_160 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_161 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_162 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_163 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_164 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_165 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_166 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_167 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_168 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_169 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_170 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_171 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_172 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_173 | 1.0 | 0.0 | 1.0 |
| LBJIKFJF_174 | 0.0 | 1.0 | 0.0 |
| LBJIKFJF_175 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBJIKFJF_84 | 20704 | 61769 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)