Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KMDGHHAD_149 | 43784 | 42606 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| KMDGHHAD_160 | 20230 | 18725 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| KMDGHHAD_144 | 4533 | 5402 | pdxS | 1.11e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| KMDGHHAD_33 | 5188 | 4412 | CodY | 1.09e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| KMDGHHAD_33 | 5188 | 4412 | codY | 5.26e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| KMDGHHAD_153 | 708 | 1277 | ClpP | 4.16e-105 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| KMDGHHAD_131 | 17976 | 17290 | WalR | 2.27e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| KMDGHHAD_116 | 7423 | 7031 | spxA1 | 7.91e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| KMDGHHAD_116 | 7423 | 7031 | spx | 1.71e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| KMDGHHAD_56 | 18094 | 18336 | SpoVG | 8.00e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| KMDGHHAD_120 | 9017 | 8820 | CspA | 3.22e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| KMDGHHAD_94 | 107209 | 107015 | CspD | 2.98e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| KMDGHHAD_94 | 107209 | 107012 | CspB | 2.00e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMDGHHAD_1 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_2 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_3 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_4 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_5 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_6 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_7 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_8 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_9 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_10 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_11 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_12 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_13 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_14 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_15 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_16 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_17 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_18 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_19 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_20 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_21 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_22 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_23 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_24 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_25 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_26 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_27 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_28 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_29 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_30 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_31 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_32 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_33 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_38 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_41 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_43 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_47 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_56 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_57 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_65 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_73 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_83 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_87 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_88 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_89 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_90 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_91 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_92 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_93 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_94 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_95 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_96 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_97 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_98 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_99 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_100 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_101 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_102 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_103 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_104 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_105 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_106 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_107 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_108 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_109 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_110 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_111 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_112 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_113 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_114 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_115 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_116 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_117 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_118 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_119 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_120 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_121 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_122 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_123 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_124 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_125 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_126 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_127 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_128 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_129 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_130 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_131 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_132 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_133 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_134 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_135 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_136 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_137 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_138 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_139 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_140 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_141 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_142 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_143 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_144 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_145 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_146 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_147 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_148 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_149 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_150 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_151 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_152 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_153 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_154 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_155 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_156 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_157 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_158 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_159 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_160 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_161 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_162 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_163 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_164 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_165 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_166 | 0.0 | 1.0 | 0.0 |
| KMDGHHAD_167 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_168 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_169 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_170 | 1.0 | 0.0 | 1.0 |
| KMDGHHAD_171 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KMDGHHAD_105 | 4069 | 29423 | False | Siphoviridae | VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)