Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDKCBIBB_74 | 2471 | 4390 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JDKCBIBB_74 | 2471 | 4390 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDKCBIBB_74 | 2474 | 4390 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDKCBIBB_7 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_8 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_9 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_12 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_16 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_21 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_24 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_26 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_28 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_31 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_33 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_34 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_35 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_40 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_42 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_44 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_45 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_46 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_48 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_49 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_52 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_54 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_55 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_58 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_60 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_61 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_63 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_64 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_65 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_66 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_68 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_69 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_70 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_71 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_72 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_73 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_74 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_78 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_79 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_80 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_82 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_85 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_86 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_88 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_89 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_90 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_92 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_94 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_95 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_97 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_98 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_99 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_100 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_102 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_110 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_114 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_118 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_119 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_120 | 1.0 | 0.0 | 1.0 |
| JDKCBIBB_122 | 0.0 | 1.0 | 0.0 |
| JDKCBIBB_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDKCBIBB_61 | 7165 | 7985 | False | Siphoviridae | VOG0598 |
| JDKCBIBB_79 | 1894 | 26906 | False | Myoviridae | VOG7894, |
| JDKCBIBB_92 | 48070 | 53473 | False | Siphoviridae | VOG0198, |
Phigaro v2.4.0 (Database: Jan. 2024 release)