Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGNGFJNL_85 | 4480 | 5430 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| KGNGFJNL_85 | 4480 | 5430 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| KGNGFJNL_85 | 4480 | 5430 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| KGNGFJNL_85 | 4480 | 5430 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGNGFJNL_85 | 4478 | 5431 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGNGFJNL_93 | 120392 | 118812 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGNGFJNL_2 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_5 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_6 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_7 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_8 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_10 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_11 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_12 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_13 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_17 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_24 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_26 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_28 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_29 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_31 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_33 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_36 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_38 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_39 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_41 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_42 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_44 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_47 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_48 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_49 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_50 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_51 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_52 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_53 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_54 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_55 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_56 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_57 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_58 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_59 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_60 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_61 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_62 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_63 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_64 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_65 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_66 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_67 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_68 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_69 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_70 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_71 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_72 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_73 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_74 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_75 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_76 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_77 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_78 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_79 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_80 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_82 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_84 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_85 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_86 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_87 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_88 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_89 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_90 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_92 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_93 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_95 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_96 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_98 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_99 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_100 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_101 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_102 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_103 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_105 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_106 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_107 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_109 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_110 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_112 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_113 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_114 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_115 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_116 | 1.0 | 0.0 | 1.0 |
| KGNGFJNL_118 | 0.0 | 1.0 | 0.0 |
| KGNGFJNL_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGNGFJNL_12 | 21541 | 33532 | False | Unknown | VOG4568, |
| KGNGFJNL_50 | 60270 | 72074 | False | Unknown | VOG4565, |
| KGNGFJNL_63 | 85439 | 98101 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)