Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFBFGLIC_3 | 22644 | 21940 | WalR | 3.06e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IFBFGLIC_134 | 54356 | 54550 | CspR | 6.18e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IFBFGLIC_134 | 54356 | 54553 | CspA | 9.49e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IFBFGLIC_129 | 705 | 1640 | rep28 | 936 / 936 | 100.00 | CP005948 |
| IFBFGLIC_59 | 423 | 1459 | rep38 | 1053 / 1104 | 80.34 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFBFGLIC_2 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_3 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_4 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_6 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_7 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_8 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_9 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_10 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_11 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_12 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_13 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_15 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_16 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_17 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_18 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_19 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_20 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_21 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_23 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_27 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_28 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_29 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_40 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_42 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_54 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_57 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_59 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_60 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_61 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_63 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_64 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_65 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_69 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_70 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_71 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_74 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_76 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_81 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_86 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_87 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_88 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_93 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_101 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_105 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_113 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_116 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_117 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_119 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_121 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_124 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_128 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_129 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_131 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_133 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_134 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_135 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_142 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_144 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_146 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_147 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_148 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_150 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_151 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_152 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_154 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_157 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_158 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_160 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_161 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_162 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_164 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_165 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_166 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_167 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_168 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_169 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_170 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_171 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_173 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_174 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_175 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_177 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_178 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_180 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_182 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_184 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_185 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_190 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_191 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_192 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_194 | 0.0 | 1.0 | 0.0 |
| IFBFGLIC_197 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_202 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_203 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_207 | 1.0 | 0.0 | 1.0 |
| IFBFGLIC_208 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFBFGLIC_3 | 23814 | 34919 | False | Siphoviridae | VOG3477, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4609, VOG4632 |
| IFBFGLIC_113 | 36995 | 46388 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556 |
| IFBFGLIC_177 | 221050 | 243342 | False | Siphoviridae | VOG0054, VOG0753, VOG2876, VOG10957, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227 |
Phigaro v2.4.0 (Database: Jan. 2024 release)