Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMIMENAE_29 | 215017 | 215907 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMIMENAE_29 | 215020 | 215907 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMIMENAE_1 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_2 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_4 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_5 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_6 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_7 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_8 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_10 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_11 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_12 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_13 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_15 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_18 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_19 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_20 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_22 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_23 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_24 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_25 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_26 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_28 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_29 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_31 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_32 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_38 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_39 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_40 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_45 | 1.0 | 0.0 | 1.0 |
| GMIMENAE_53 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_54 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_56 | 0.0 | 1.0 | 0.0 |
| GMIMENAE_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMIMENAE_5 | 160506 | 170969 | False | Unknown | VOG4573, |
| GMIMENAE_40 | 18254 | 30456 | False | Siphoviridae | VOG0052, |
| GMIMENAE_45 | 100088 | 110799 | False | Unknown | VOG0083, |
| GMIMENAE_53 | 300645 | 312411 | False | Unknown | VOG4690, |
| GMIMENAE_54 | 51766 | 64833 | False | Unknown | VOG0572, |
| GMIMENAE_54 | 96832 | 109979 | False | Myoviridae | VOG0226, |
Phigaro v2.4.0 (Database: Jan. 2024 release)