Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KHGFKHGK_84 | 14681 | 15847 | tet(X) | ARO:3000205 | tet(X) | 96.39 | 100.00 | M37699.1 |
| KHGFKHGK_83 | 1875 | 3800 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KHGFKHGK_83 | 1875 | 3800 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KHGFKHGK_84 | 16057 | 16857 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.63 | 100.00 | M62487 |
| KHGFKHGK_84 | 14681 | 15847 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 96.74 | 100.00 | GU014535 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KHGFKHGK_83 | 1875 | 3797 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KHGFKHGK_84 | 12795 | 13421 | aadS | aminoglycoside 6-adenylyltransferase AadS | PARTIALX | 99.52 | 72.82 | WP_003013318.1 |
| KHGFKHGK_84 | 13678 | 14517 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| KHGFKHGK_84 | 16060 | 16857 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | INTERNAL_STOP | 98.87 | 100.00 | WP_063844771.1 |
| KHGFKHGK_84 | 14681 | 15844 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 96.65 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KHGFKHGK_3 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_5 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_6 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_7 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_10 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_11 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_12 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_13 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_17 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_19 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_20 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_25 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_28 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_30 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_31 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_32 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_35 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_38 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_41 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_45 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_46 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_47 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_58 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_60 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_61 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_65 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_69 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_70 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_71 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_80 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_81 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_82 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_83 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_84 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_86 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_87 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_88 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_89 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_90 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_91 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_92 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_93 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_94 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_95 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_96 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_97 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_98 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_101 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_102 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_104 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_105 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_106 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_108 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_109 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_110 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_111 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_112 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_114 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_117 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_118 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_120 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_124 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_126 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_129 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_131 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_133 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_136 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_137 | 1.0 | 0.0 | 1.0 |
| KHGFKHGK_138 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_141 | 0.0 | 1.0 | 0.0 |
| KHGFKHGK_143 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)