Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEHDNBHG_134 | 3688 | 5634 | tet(Q) | ARO:3000191 | tet(Q) | 95.28 | 98.63 | Z21523.1 |
| IEHDNBHG_90 | 2540 | 3745 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| IEHDNBHG_60 | 291 | 1052 | ErmB | ARO:3000375 | ErmB | 97.95 | 102.02 | AF242872.1 |
| IEHDNBHG_97 | 25 | 1470 | tet(Q) | ARO:3000191 | tet(Q) | 94.57 | 73.21 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IEHDNBHG_50 | 62035 | 62901 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| IEHDNBHG_60 | 324 | 1052 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 98.78 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEHDNBHG_50 | 62038 | 62901 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| IEHDNBHG_56 | 21824 | 22729 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| IEHDNBHG_90 | 2006 | 2515 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| IEHDNBHG_90 | 2543 | 3745 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| IEHDNBHG_60 | 318 | 1049 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 99.59 | WP_002292226.1 |
| IEHDNBHG_134 | 3691 | 5586 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.97 | 100.00 | WP_004293868.1 |
| IEHDNBHG_97 | 73 | 1470 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 94.77 | 74.57 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IEHDNBHG_25 | 127971 | 129551 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IEHDNBHG_1 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_2 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_3 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_7 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_9 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_11 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_13 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_14 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_15 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_17 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_19 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_20 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_21 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_25 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_27 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_29 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_30 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_31 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_32 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_34 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_35 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_38 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_39 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_42 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_45 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_46 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_47 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_50 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_51 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_55 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_56 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_57 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_60 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_63 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_66 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_70 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_72 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_75 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_76 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_79 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_81 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_83 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_84 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_85 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_86 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_87 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_88 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_89 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_90 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_91 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_92 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_94 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_95 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_96 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_97 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_100 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_101 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_102 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_104 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_105 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_107 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_108 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_110 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_111 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_112 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_113 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_114 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_117 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_120 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_123 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_124 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_126 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_127 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_128 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_129 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_131 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_132 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_133 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_134 | 0.0 | 1.0 | 0.0 |
| IEHDNBHG_139 | 1.0 | 0.0 | 1.0 |
| IEHDNBHG_140 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)