Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MMIEIHBH_1 | 2292995 | 2292294 | WalR | 3.18e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MMIEIHBH_1 | 0.0 | 1.0 | 0.0 |
| MMIEIHBH_2 | 1.0 | 0.0 | 1.0 |
| MMIEIHBH_3 | 1.0 | 0.0 | 1.0 |
| MMIEIHBH_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MMIEIHBH_1 | 1008541 | 1044088 | False | Myoviridae | VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044, VOG4010, VOG0198, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6131, VOG5068, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4894, VOG0565, VOG3298, VOG3298 |
| MMIEIHBH_1 | 1396053 | 1426840 | False | Myoviridae | VOG0861, VOG7896, VOG0870, VOG4845, VOG4691, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4710, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG4602, VOG0275, VOG0796, VOG5446, VOG0198 |
| MMIEIHBH_1 | 1431552 | 1446361 | False | Siphoviridae | VOG0025, VOG4799, VOG0226, VOG0322, VOG0685, VOG0685, VOG6495, VOG0650, VOG3246, VOG4552, VOG1656, VOG8520, VOG0862, VOG1561, VOG0275, VOG10391, VOG4549, VOG1292 |
| MMIEIHBH_4 | 6721 | 12918 | False | Myoviridae | VOG4550, VOG4691, VOG4845, VOG4705, VOG0703 |
| MMIEIHBH_4 | 18145 | 39215 | False | Siphoviridae | VOG4931, VOG6495, VOG11003, VOG4552, VOG0787, VOG0321, VOG0283, VOG0226, VOG0514, VOG10904, VOG8647, VOG0189, VOG0052, VOG3480, VOG0044, VOG7416, VOG4010, VOG0149, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329 |
Phigaro v2.4.0 (Database: Jan. 2024 release)