Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 1 | 4 | 7.28 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNODPCNG_21 | 597824 | 598669 | Erm(34) | ARO:3000600 | Erm(34) | 96.80 | 100.00 | AY234334.1 |
| CNODPCNG_45 | 267779 | 268831 | clbC | ARO:3002816 | clbC | 100.00 | 100.00 | AP006627.1 |
| CNODPCNG_3 | 16706 | 17630 | BCL-1 | ARO:3004749 | BCL-1 | 100.00 | 98.05 | EF540343.1 |
| CNODPCNG_3 | 13541 | 14311 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 100.00 | 100.00 | EF540343.1 |
| CNODPCNG_9 | 25 | 672 | Alkalihalobacillus clausii chloramphenicol acetyltransferase | ARO:3004452 | Acla_ACT_CHL | 88.68 | 94.30 | AY238971.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CNODPCNG_3 | 13541 | 14311 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 100.00 | 100.00 | AJ506108 |
| CNODPCNG_9 | 1 | 670 | cat | Chloramphenicol | 97.49 | 97.38 | AY238971 |
| CNODPCNG_21 | 597831 | 598669 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 95.47 | 99.17 | AY234334 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNODPCNG_3 | 13541 | 14308 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | EXACTX | 100.00 | 100.00 | WP_035202393.1 |
| CNODPCNG_3 | 16724 | 17626 | blaBCL-1 | class A beta-lactamase BCL-1 | ALLELEX | 100.00 | 100.00 | WP_065825670.1 |
| CNODPCNG_9 | 28 | 672 | catA | type A-10 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_035203840.1 |
| CNODPCNG_45 | 267782 | 268831 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | EXACTX | 100.00 | 100.00 | WP_011245929.1 |
| CNODPCNG_21 | 597830 | 598669 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 97.14 | 99.64 | WP_063844504.1 |
| CNODPCNG_21 | 700214 | 702805 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.14 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CNODPCNG_11 | 531850 | 532500 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CNODPCNG_2 | 37207 | 36071 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| CNODPCNG_1 | 42993 | 42751 | SpoVG | 2.58e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| CNODPCNG_29 | 599949 | 600143 | CspA | 2.89e-29 | cold shock protein | 86.15 | 98.48 | CAA62903 |
| CNODPCNG_21 | 149302 | 149111 | msaB | 2.08e-25 | cold shock protein | 81.25 | 96.97 | ABD22065 |
| CNODPCNG_21 | 149299 | 149111 | CspB | 1.78e-24 | cold shock protein | 80.95 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CNODPCNG_1 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_2 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_3 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_4 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_5 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_6 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_7 | 1.0 | 0.0 | 1.0 |
| CNODPCNG_8 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_9 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_11 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_21 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_29 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_38 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_44 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_45 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_46 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_47 | 0.0 | 1.0 | 0.0 |
| CNODPCNG_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CNODPCNG_11 | 56448 | 85530 | False | Siphoviridae | VOG6091, VOG4724, VOG0602, VOG0753, VOG4669, VOG0565, VOG4619, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG0816, VOG4623, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG0796, VOG4585, VOG5447, VOG6242 |
Phigaro v2.4.0 (Database: Jan. 2024 release)