Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 1 | 4 | 7.28 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHPBFFBG_511 | 18204 | 18851 | Alkalihalobacillus clausii chloramphenicol acetyltransferase | ARO:3004452 | Acla_ACT_CHL | 88.68 | 94.30 | AY238971.1 |
| GHPBFFBG_526 | 13730 | 14575 | Erm(34) | ARO:3000600 | Erm(34) | 96.80 | 100.00 | AY234334.1 |
| GHPBFFBG_13 | 8750 | 9520 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 100.00 | 100.00 | EF540343.1 |
| GHPBFFBG_13 | 5432 | 6356 | BCL-1 | ARO:3004749 | BCL-1 | 100.00 | 98.05 | EF540343.1 |
| GHPBFFBG_26 | 3317 | 4369 | clbC | ARO:3002816 | clbC | 100.00 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GHPBFFBG_13 | 8750 | 9520 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 100.00 | 100.00 | AJ506108 |
| GHPBFFBG_511 | 18173 | 18849 | cat | Chloramphenicol | 97.52 | 98.40 | AY238971 |
| GHPBFFBG_526 | 13730 | 14568 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 95.47 | 99.17 | AY234334 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHPBFFBG_13 | 8753 | 9520 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | EXACTX | 100.00 | 100.00 | WP_035202393.1 |
| GHPBFFBG_13 | 5435 | 6337 | blaBCL-1 | class A beta-lactamase BCL-1 | ALLELEX | 100.00 | 100.00 | WP_065825670.1 |
| GHPBFFBG_511 | 18207 | 18851 | catA | type A-10 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_035203840.1 |
| GHPBFFBG_26 | 3320 | 4369 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | EXACTX | 100.00 | 100.00 | WP_011245929.1 |
| GHPBFFBG_526 | 13730 | 14569 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 97.14 | 99.64 | WP_063844504.1 |
| GHPBFFBG_506 | 1063 | 3654 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.14 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GHPBFFBG_212 | 16732 | 17382 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GHPBFFBG_480 | 37596 | 36460 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| GHPBFFBG_44 | 14190 | 14432 | SpoVG | 1.84e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| GHPBFFBG_118 | 467 | 661 | CspA | 1.44e-33 | cold shock protein | 86.15 | 98.48 | CAA62903 |
| GHPBFFBG_224 | 13440 | 13249 | msaB | 1.07e-26 | cold shock protein | 81.25 | 96.97 | ABD22065 |
| GHPBFFBG_224 | 13437 | 13249 | CspB | 9.21e-26 | cold shock protein | 80.95 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHPBFFBG_1 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_2 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_3 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_4 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_5 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_6 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_7 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_8 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_9 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_10 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_11 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_12 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_13 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_14 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_15 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_16 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_17 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_18 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_19 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_20 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_21 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_22 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_23 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_24 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_25 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_26 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_27 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_28 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_29 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_30 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_31 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_32 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_33 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_34 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_35 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_36 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_37 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_38 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_39 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_40 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_41 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_42 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_43 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_44 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_45 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_46 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_47 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_48 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_49 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_50 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_51 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_52 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_53 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_54 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_55 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_56 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_57 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_58 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_59 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_60 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_61 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_62 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_63 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_64 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_65 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_66 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_67 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_68 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_69 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_70 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_71 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_72 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_73 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_74 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_75 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_76 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_77 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_78 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_79 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_80 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_81 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_82 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_83 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_84 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_85 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_86 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_87 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_88 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_89 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_90 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_91 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_92 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_93 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_94 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_95 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_96 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_97 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_98 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_99 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_100 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_101 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_102 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_103 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_104 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_105 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_106 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_107 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_110 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_111 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_113 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_114 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_122 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_133 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_144 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_153 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_164 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_175 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_184 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_194 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_202 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_212 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_213 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_224 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_235 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_245 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_255 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_265 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_273 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_283 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_292 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_303 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_311 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_312 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_322 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_332 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_340 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_348 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_357 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_366 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_377 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_388 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_395 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_404 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_405 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_415 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_424 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_433 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_443 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_453 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_463 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_473 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_475 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_476 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_479 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_480 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_482 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_484 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_486 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_487 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_488 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_489 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_490 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_491 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_492 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_493 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_494 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_495 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_496 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_497 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_498 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_499 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_500 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_501 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_502 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_503 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_504 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_505 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_506 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_507 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_508 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_509 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_510 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_511 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_512 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_513 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_514 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_515 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_516 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_517 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_518 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_519 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_520 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_521 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_522 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_523 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_524 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_525 | 1.0 | 0.0 | 1.0 |
| GHPBFFBG_526 | 0.0 | 1.0 | 0.0 |
| GHPBFFBG_527 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHPBFFBG_311 | 10116 | 30381 | False | Siphoviridae | VOG6091, VOG4724, VOG0602, VOG0753, VOG4669, VOG0565, VOG4619, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG0816, VOG4623, VOG1887, VOG3434, VOG4555 |
Phigaro v2.4.0 (Database: Jan. 2024 release)