Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMJNPJJE_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMJNPJJE_1 | 6167 | 19177 | False | Myoviridae / Siphoviridae | VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
| OMJNPJJE_1 | 268586 | 275667 | True | Myoviridae | VOG5088, VOG5088, VOG4737, VOG5532, VOG0944 |
| OMJNPJJE_1 | 815181 | 863731 | False | Siphoviridae | VOG4552, VOG2228, VOG1309, VOG0186, VOG0226, VOG0514, VOG8647, VOG0189, VOG8685, VOG4010, VOG4693, VOG3307, VOG1993, VOG1183, VOG4559, VOG2474, VOG5353, VOG0198, VOG1446, VOG0198, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG8263, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223, VOG8917, VOG0703, VOG9955, VOG1637, VOG0703, VOG4824 |
| OMJNPJJE_1 | 1352213 | 1374591 | False | Siphoviridae | VOG7581, VOG9267, VOG7340, VOG3685, VOG7424, VOG0944, VOG4564, VOG0720, VOG0720, VOG10227, VOG0796, VOG1315, VOG0198, VOG0536, VOG0189, VOG4566, VOG0550, VOG0226, VOG0186, VOG1309, VOG2228, VOG0650, VOG9667, VOG7298, VOG0862, VOG0819 |
| OMJNPJJE_1 | 1406547 | 1416709 | True | Myoviridae / Siphoviridae | VOG9967, VOG1292, VOG1026, VOG4357, VOG4624, VOG1355 |
| OMJNPJJE_1 | 1658801 | 1673952 | False | Myoviridae | VOG8353, VOG4025, VOG0198, VOG4573, VOG5412, VOG0982, VOG7442, VOG4548 |
Phigaro v2.4.0 (Database: Jan. 2024 release)