Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EBFEHKKE_2 | 84070 | 85065 | repUS67 | 1003 / 1039 | 89.43 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EBFEHKKE_1 | 0.0 | 1.0 | 0.0 |
| EBFEHKKE_2 | 1.0 | 0.0 | 1.0 |
| EBFEHKKE_3 | 1.0 | 0.0 | 1.0 |
| EBFEHKKE_4 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EBFEHKKE_1 | 523296 | 538331 | False | Siphoviridae | VOG0979, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG0979, VOG4841, VOG0205, VOG4606, VOG4632, VOG1406 |
| EBFEHKKE_1 | 833373 | 846010 | False | Siphoviridae | VOG1406, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198 |
| EBFEHKKE_1 | 1114180 | 1117968 | False | Unknown | VOG0189, VOG4357 |
| EBFEHKKE_1 | 1274514 | 1306730 | False | Siphoviridae | VOG8013, VOG5229, VOG0703, VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866, VOG6183, VOG0198, VOG4039, VOG4693 |
| EBFEHKKE_1 | 1679463 | 1707108 | True | Siphoviridae | VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221, VOG9671, VOG0350, VOG1844 |
| EBFEHKKE_2 | 57068 | 74787 | False | Unknown | VOG0054, VOG0753, VOG0648, VOG9091, VOG10609, VOG6540, VOG5534, VOG7628, VOG7629, VOG6036, VOG6941, VOG1026, VOG6246, VOG6524 |
Phigaro v2.4.0 (Database: Jan. 2024 release)