Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| APFKBCAI_11 | 25776 | 25072 | WalR | 4.25e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| APFKBCAI_1 | 47382 | 47185 | CspR | 5.45e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| APFKBCAI_1 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_2 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_3 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_4 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_5 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_6 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_7 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_8 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_9 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_10 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_11 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_12 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_13 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_14 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_15 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_16 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_17 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_18 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_19 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_20 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_21 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_22 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_23 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_24 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_25 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_26 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_27 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_28 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_29 | 1.0 | 0.0 | 1.0 |
| APFKBCAI_31 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_33 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_37 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_46 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_54 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_55 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_56 | 0.0 | 1.0 | 0.0 |
| APFKBCAI_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| APFKBCAI_1 | 224 | 27004 | False | Siphoviridae | VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG4570, VOG7136, VOG0198, VOG6815, VOG3643, VOG2820, VOG9741, VOG4693, VOG6623, VOG9860, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309 |
| APFKBCAI_37 | 224 | 33637 | False | Siphoviridae | VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG10904, VOG4570, VOG3691, VOG0198, VOG3643, VOG0152, VOG0195, VOG6238, VOG4693, VOG6623, VOG0189, VOG4566, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3622, VOG9667, VOG10933 |
Phigaro v2.4.0 (Database: Jan. 2024 release)