Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GPHJLHNP_11 | 58811 | 59515 | WalR | 4.75e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GPHJLHNP_315 | 408 | 211 | CspR | 5.45e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GPHJLHNP_139 | 1057 | 2117 | repUS73 | 1061 / 1101 | 97.27 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPHJLHNP_1 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_2 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_3 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_4 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_5 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_6 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_7 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_8 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_9 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_10 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_11 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_12 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_13 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_14 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_15 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_16 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_17 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_18 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_19 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_20 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_21 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_22 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_23 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_25 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_26 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_27 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_29 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_30 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_31 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_32 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_33 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_34 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_35 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_36 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_37 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_38 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_39 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_40 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_41 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_42 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_43 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_44 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_45 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_46 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_47 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_48 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_49 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_50 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_51 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_52 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_53 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_54 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_55 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_56 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_58 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_59 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_60 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_61 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_62 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_63 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_64 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_65 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_66 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_67 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_68 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_69 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_70 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_71 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_72 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_73 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_74 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_77 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_78 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_79 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_80 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_81 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_89 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_99 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_100 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_110 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_120 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_129 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_139 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_149 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_159 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_170 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_181 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_192 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_203 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_204 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_215 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_226 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_237 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_248 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_259 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_270 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_281 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_292 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_295 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_296 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_297 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_298 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_299 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_300 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_301 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_302 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_303 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_304 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_305 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_306 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_307 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_308 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_309 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_310 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_311 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_312 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_313 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_314 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_315 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_316 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_317 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_318 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_319 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_320 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_321 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_322 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_323 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_324 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_325 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_326 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_327 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_328 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_329 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_330 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_331 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_332 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_333 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_334 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_335 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_336 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_337 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_338 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_339 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_340 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_341 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_342 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_343 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_344 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_345 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_346 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_347 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_348 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_349 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_350 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_351 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_352 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_353 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_354 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_355 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_356 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_357 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_358 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_359 | 0.0 | 1.0 | 0.0 |
| GPHJLHNP_360 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_361 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_362 | 1.0 | 0.0 | 1.0 |
| GPHJLHNP_363 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPHJLHNP_352 | 18435 | 49384 | False | Siphoviridae | VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG9846, VOG4673, VOG0744, VOG4693, VOG5562, VOG5998, VOG4900, VOG0189, VOG4566, VOG11003, VOG1309, VOG4600, VOG10867, VOG0181, VOG4552, VOG5353, VOG6495, VOG4602, VOG9897 |
| GPHJLHNP_352 | 65253 | 73217 | False | Myoviridae / Siphoviridae | VOG3477, VOG9953, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455 |
Phigaro v2.4.0 (Database: Jan. 2024 release)