Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GECKLLHP_35 | 38548 | 39249 | WalR | 6.45e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GECKLLHP_202 | 822 | 1757 | rep28 | 936 / 936 | 99.68 | CP005948 |
| GECKLLHP_152 | 13183 | 14222 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
| GECKLLHP_44 | 186 | 684 | repUS54 | 500 / 690 | 85.00 | EU185047 |
| GECKLLHP_197 | 1 | 956 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GECKLLHP_1 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_2 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_3 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_4 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_5 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_6 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_7 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_8 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_9 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_10 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_11 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_12 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_13 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_14 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_15 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_16 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_17 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_18 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_19 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_20 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_21 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_22 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_23 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_24 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_25 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_26 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_28 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_29 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_30 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_31 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_32 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_33 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_34 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_35 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_36 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_37 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_38 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_39 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_40 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_41 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_42 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_43 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_44 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_46 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_47 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_48 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_49 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_50 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_51 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_52 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_53 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_54 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_55 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_56 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_57 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_58 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_59 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_68 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_79 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_90 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_101 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_112 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_113 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_120 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_121 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_122 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_123 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_124 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_125 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_126 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_127 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_128 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_129 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_130 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_131 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_132 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_133 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_134 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_135 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_136 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_137 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_138 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_139 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_140 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_141 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_142 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_143 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_144 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_145 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_146 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_147 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_148 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_149 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_150 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_151 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_152 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_153 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_154 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_155 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_156 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_157 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_158 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_159 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_160 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_161 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_162 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_163 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_164 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_165 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_166 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_167 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_168 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_169 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_170 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_171 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_172 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_173 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_174 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_175 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_176 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_177 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_178 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_179 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_180 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_181 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_182 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_183 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_184 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_185 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_186 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_187 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_188 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_189 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_190 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_191 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_192 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_193 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_194 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_195 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_196 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_197 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_198 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_199 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_200 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_201 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_202 | 1.0 | 0.0 | 1.0 |
| GECKLLHP_203 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_204 | 0.0 | 1.0 | 0.0 |
| GECKLLHP_205 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GECKLLHP_68 | 11519 | 42339 | False | Myoviridae | VOG4845, VOG4691, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG4910, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG4944, VOG0045, VOG0198, VOG0149, VOG3643, VOG0044, VOG4567, VOG0052, VOG0189, VOG8647, VOG0514 |
| GECKLLHP_101 | 2888 | 15086 | False | Siphoviridae | VOG0573, VOG0044, VOG6005, VOG4693, VOG7236, VOG0186, VOG1309, VOG0650, VOG5353, VOG0787, VOG5616, VOG0707, VOG9667, VOG6495, VOG4602, VOG6914 |
Phigaro v2.4.0 (Database: Jan. 2024 release)