Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PHEDMDMH_1 | 222170 | 221466 | WalR | 1.96e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PHEDMDMH_145 | 34585 | 34779 | CspR | 5.31e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PHEDMDMH_145 | 34585 | 34782 | CspA | 8.14e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PHEDMDMH_105 | 1 | 934 | rep28 | 934 / 936 | 100.00 | CP005948 |
| PHEDMDMH_89 | 5321 | 6421 | repUS73 | 1101 / 1101 | 97.37 | CP002654 |
| PHEDMDMH_124 | 3626 | 4649 | rep38 | 1026 / 1104 | 88.79 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHEDMDMH_1 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_2 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_13 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_24 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_35 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_46 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_57 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_68 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_76 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_77 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_78 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_79 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_80 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_81 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_82 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_83 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_84 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_85 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_86 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_87 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_88 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_89 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_90 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_91 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_92 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_93 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_94 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_95 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_96 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_97 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_98 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_99 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_100 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_101 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_102 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_103 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_104 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_105 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_106 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_107 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_108 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_109 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_110 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_111 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_112 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_113 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_114 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_115 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_116 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_117 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_118 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_119 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_120 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_121 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_122 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_123 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_124 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_125 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_126 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_127 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_128 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_129 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_130 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_131 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_132 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_133 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_134 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_135 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_136 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_137 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_139 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_140 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_141 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_142 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_143 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_144 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_145 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_146 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_147 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_148 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_149 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_150 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_151 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_152 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_154 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_155 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_156 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_157 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_158 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_159 | 0.0 | 1.0 | 0.0 |
| PHEDMDMH_160 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_161 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_162 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_163 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_164 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_165 | 1.0 | 0.0 | 1.0 |
| PHEDMDMH_166 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PHEDMDMH_79 | 112892 | 136167 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| PHEDMDMH_112 | 93681 | 104800 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| PHEDMDMH_156 | 68688 | 103470 | False | Siphoviridae | VOG0181, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0822, VOG4673, VOG10184, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)