Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LHEJKOMA_1388828388124WalR5.57e-115transcriptional regulatory protein84.25100.00EPH95667
LHEJKOMA_45154524154330CspR1.10e-29cold shock protein84.6198.48AAO82613
LHEJKOMA_45154524154327CspA1.69e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
LHEJKOMA_1614602257rep38816 / 90381.86CP005943
LHEJKOMA_192936rep28940 / 93081.28CP003162

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LHEJKOMA_10.01.00.0
LHEJKOMA_21.00.01.0
LHEJKOMA_30.01.00.0
LHEJKOMA_40.01.00.0
LHEJKOMA_50.01.00.0
LHEJKOMA_60.01.00.0
LHEJKOMA_70.01.00.0
LHEJKOMA_81.00.01.0
LHEJKOMA_91.00.01.0
LHEJKOMA_101.00.01.0
LHEJKOMA_111.00.01.0
LHEJKOMA_120.01.00.0
LHEJKOMA_131.00.01.0
LHEJKOMA_141.00.01.0
LHEJKOMA_150.01.00.0
LHEJKOMA_161.00.01.0
LHEJKOMA_171.00.01.0
LHEJKOMA_181.00.01.0
LHEJKOMA_191.00.01.0
LHEJKOMA_201.00.01.0
LHEJKOMA_211.00.01.0
LHEJKOMA_221.00.01.0
LHEJKOMA_230.01.00.0
LHEJKOMA_241.00.01.0
LHEJKOMA_251.00.01.0
LHEJKOMA_260.01.00.0
LHEJKOMA_291.00.01.0
LHEJKOMA_301.00.01.0
LHEJKOMA_311.00.01.0
LHEJKOMA_321.00.01.0
LHEJKOMA_340.01.00.0
LHEJKOMA_351.00.01.0
LHEJKOMA_361.00.01.0
LHEJKOMA_370.01.00.0
LHEJKOMA_450.01.00.0
LHEJKOMA_560.01.00.0
LHEJKOMA_640.01.00.0
LHEJKOMA_650.01.00.0
LHEJKOMA_660.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LHEJKOMA_12150289179684FalseSiphoviridaeVOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0686, VOG0418, VOG0198, VOG3643
LHEJKOMA_12195744207695FalseSiphoviridaeVOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632
LHEJKOMA_3479997113723FalseSiphoviridaeVOG1298, VOG0044, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998, VOG0753, VOG1521

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements