Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFGAADOH_35 | 38548 | 39249 | WalR | 6.45e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LFGAADOH_209 | 822 | 1757 | rep28 | 936 / 936 | 99.68 | CP005948 |
| LFGAADOH_157 | 13743 | 14782 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
| LFGAADOH_45 | 186 | 684 | repUS54 | 500 / 690 | 85.00 | EU185047 |
| LFGAADOH_204 | 1 | 956 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFGAADOH_1 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_2 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_3 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_4 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_5 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_6 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_7 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_8 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_9 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_10 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_11 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_12 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_13 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_14 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_15 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_16 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_17 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_18 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_19 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_20 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_21 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_22 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_23 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_24 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_25 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_26 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_27 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_29 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_30 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_31 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_32 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_33 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_34 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_35 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_36 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_37 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_38 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_39 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_40 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_41 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_42 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_43 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_44 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_45 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_46 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_48 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_49 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_50 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_51 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_52 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_53 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_54 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_55 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_56 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_57 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_58 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_59 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_60 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_61 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_68 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_79 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_90 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_101 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_112 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_113 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_124 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_126 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_127 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_128 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_129 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_130 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_131 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_132 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_133 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_134 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_135 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_136 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_137 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_138 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_139 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_140 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_141 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_142 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_143 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_144 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_145 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_146 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_147 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_148 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_149 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_150 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_151 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_152 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_153 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_154 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_155 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_156 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_157 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_158 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_159 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_160 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_161 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_162 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_163 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_164 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_165 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_166 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_167 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_168 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_169 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_170 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_171 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_172 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_173 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_174 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_175 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_176 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_177 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_178 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_179 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_180 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_181 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_182 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_183 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_184 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_185 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_186 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_187 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_188 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_189 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_190 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_191 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_192 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_193 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_194 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_195 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_196 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_197 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_198 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_199 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_200 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_201 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_202 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_203 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_204 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_205 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_206 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_207 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_208 | 0.0 | 1.0 | 0.0 |
| LFGAADOH_209 | 1.0 | 0.0 | 1.0 |
| LFGAADOH_210 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFGAADOH_68 | 2741 | 33561 | False | Myoviridae | VOG0226, VOG0514, VOG8647, VOG0189, VOG0052, VOG4567, VOG0044, VOG3643, VOG0149, VOG0198, VOG0045, VOG4944, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG6684, VOG4910, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4691, VOG4845 |
| LFGAADOH_101 | 2888 | 15086 | False | Siphoviridae | VOG0573, VOG0044, VOG6005, VOG4693, VOG7236, VOG0186, VOG1309, VOG0650, VOG5353, VOG0787, VOG5616, VOG0707, VOG9667, VOG6495, VOG4602, VOG6914 |
Phigaro v2.4.0 (Database: Jan. 2024 release)