Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JICFFBPP_3 | 128918 | 129970 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
| JICFFBPP_16 | 37664 | 38434 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| JICFFBPP_2 | 33193 | 34038 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JICFFBPP_2 | 33193 | 34038 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.87 | 100.00 | AY234334 |
| JICFFBPP_16 | 37664 | 38434 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JICFFBPP_2 | 33193 | 34035 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| JICFFBPP_3 | 128921 | 129970 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| JICFFBPP_16 | 34348 | 35250 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| JICFFBPP_16 | 37667 | 38434 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JICFFBPP_11 | 241941 | 242591 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 96.77 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JICFFBPP_15 | 39628 | 38486 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| JICFFBPP_18 | 36211 | 36453 | SpoVG | 1.70e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JICFFBPP_40 | 6205 | 6008 | CspA | 1.47e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| JICFFBPP_1 | 137749 | 137937 | CspB | 1.90e-25 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JICFFBPP_1 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_2 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_3 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_4 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_5 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_6 | 1.0 | 0.0 | 1.0 |
| JICFFBPP_7 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_8 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_9 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_10 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_11 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_12 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_13 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_14 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_15 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_16 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_17 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_18 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_19 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_20 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_21 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_22 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_23 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_24 | 1.0 | 0.0 | 1.0 |
| JICFFBPP_25 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_26 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_27 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_28 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_29 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_30 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_31 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_32 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_33 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_34 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_35 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_36 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_37 | 1.0 | 0.0 | 1.0 |
| JICFFBPP_38 | 1.0 | 0.0 | 1.0 |
| JICFFBPP_39 | 1.0 | 0.0 | 1.0 |
| JICFFBPP_40 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_41 | 1.0 | 0.0 | 1.0 |
| JICFFBPP_42 | 1.0 | 0.0 | 1.0 |
| JICFFBPP_43 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_44 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_45 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_47 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_48 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_50 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_55 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_66 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_67 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_68 | 0.0 | 1.0 | 0.0 |
| JICFFBPP_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JICFFBPP_6 | 3478 | 28559 | False | Siphoviridae | VOG4841, VOG4581, VOG10684, VOG5051, VOG4556, VOG4568, VOG4553, VOG7168, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4660, VOG4619, VOG0641, VOG8236, VOG7068, VOG0018, VOG6116, VOG0866 |
| JICFFBPP_6 | 29594 | 38297 | False | Siphoviridae | VOG4602, VOG8520, VOG5353, VOG4552, VOG0468, VOG6414, VOG6931, VOG0535, VOG1936, VOG4606 |
| JICFFBPP_6 | 53618 | 67964 | False | Siphoviridae | VOG5583, VOG0295, VOG0189, VOG0025, VOG4551, VOG1563, VOG0052, VOG7255, VOG5753, VOG10937, VOG8252, VOG0026 |
| JICFFBPP_6 | 88380 | 99624 | False | Siphoviridae | VOG4555, VOG3676, VOG5270, VOG4564, VOG0697, VOG0799, VOG0725, VOG6163 |
| JICFFBPP_24 | 7635 | 38693 | False | Siphoviridae | VOG4552, VOG4799, VOG0189, VOG6587, VOG0052, VOG1129, VOG0226, VOG0085, VOG4693, VOG8548, VOG4673, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4711, VOG1322, VOG0695, VOG0696, VOG0697, VOG0698, VOG0700, VOG0701, VOG0648, VOG0801, VOG4669, VOG4619 |
Phigaro v2.4.0 (Database: Jan. 2024 release)